Gene name: NAF1
Reference locus (S288C): YNL124W
Gene biotype: protein_coding
Description: H/ACA ribonucleoprotein complex non-core subunit NAF1; RNA-binding protein required for the assembly of box H/ACA snoRNPs; thus required for pre-rRNA processing; forms a complex with Shq1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p; similar to Gar1p; Belongs to the NAF1 family
Top 10 interactors (score): NHP2 (0.999); CBF5 (0.998); NOP10 (0.988); GAR1 (0.98); NOP15 (0.951); SHQ1 (0.937); NOP7 (0.933); DBP7 (0.931); HCA4 (0.929); KRI1 (0.928); NOG1 (0.923); DIP2 (0.92); DBP10 (0.919); PWP2 (0.918); UTP5 (0.918); NOP14 (0.917); TSR1 (0.917); UTP13 (0.916); NOP4 (0.914); SDA1 (0.912)
Homologues (species, bitscore): NAF1 (Homo sapiens, 100.5); Naf1 (Mus musculus, 94.0); naf1 (Danio rerio, 86.3); CG10341 (Drosophila melanogaster, 77.4); NAF1 (Arabidopsis thaliana, 98.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:386576-388054:+ | gene-YNL124W_AKU4011 | rna-NM_001182962.3_AKU4011 | cds-NP_014275.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:290571-292049:+ | gene-YNL124W_BG1 | rna-NM_001182962.3_BG1 | cds-NP_014275.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:397041-398519:+ | gene-YNL124W_Bruggeman | rna-NM_001182962.3_Bruggeman | cds-NP_014275.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:440354-441832:+ | gene-YNL124W_CAT1 | rna-NM_001182962.3_CAT1 | cds-NP_014275.3_CAT1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:387196-388674:+ | gene-YNL124W_CBS1585 | rna-NM_001182962.3_CBS1585 | cds-NP_014275.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:455587-457065:+ | gene-YNL124W_CBS436 | rna-NM_001182962.3_CBS436 | cds-NP_014275.3_CBS436 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:382649-384127:+ | gene-YNL124W_CBS6412 | rna-NM_001182962.3_CBS6412 | cds-NP_014275.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:383614-385092:+ | gene-YNL124W_CBS6413 | rna-NM_001182962.3_CBS6413 | cds-NP_014275.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:386742-388220:+ | gene-YNL124W_CENPK1137D | rna-NM_001182962.3_CENPK1137D | cds-NP_014275.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:383566-385044:+ | gene-YNL124W_EthanolRed | rna-NM_001182962.3_EthanolRed | cds-NP_014275.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:379468-380946:+ | gene-YNL124W_FaliES1 | rna-NM_001182962.3_FaliES1 | cds-NP_014275.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000021.1:35848-37326:+ | gene-YNL124W_JAY291 | rna-NM_001182962.3_JAY291 | cds-NP_014275.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:392687-394165:+ | gene-YNL124W_MUCL30387 | rna-NM_001182962.3_MUCL30387 | cds-NP_014275.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:428148-429626:+ | gene-YNL124W_MUCL30388 | rna-NM_001182962.3_MUCL30388 | cds-NP_014275.3_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:384475-385953:+ | gene-YNL124W_MUCL39482 | rna-NM_001182962.3_MUCL39482 | cds-NP_014275.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:387465-388943:+ | gene-YNL124W_MUCL42920 | rna-NM_001182962.3_MUCL42920 | cds-NP_014275.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:392861-394339:+ | gene-YNL124W_NCIM3186 | rna-NM_001182962.3_NCIM3186 | cds-NP_014275.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:386607-388085:+ | gene-YNL124W_NCYC1407 | rna-NM_001182962.3_NCYC1407 | cds-NP_014275.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:385596-387074:+ | gene-YNL124W_PE2H3 | rna-NM_001182962.3_PE2H3 | cds-NP_014275.3_PE2H3 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:384984-386462:+ | gene-YNL124W_PE2H4 | rna-NM_001182962.3_PE2H4 | cds-NP_014275.3_PE2H4 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:392892-394370:+ | gene-YNL124W_S288C | rna-NM_001182962.3_S288C | cds-NP_014275.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:19142-20620:- | gene-YNL124W_SA1 | rna-NM_001182962.3_SA1 | cds-NP_014275.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:380322-381800:+ | gene-YNL124W_ThermosaccDry | rna-NM_001182962.3_ThermosaccDry | cds-NP_014275.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:398982-400460:+ | gene-YNL124W_VR1 | rna-NM_001182962.3_VR1 | cds-NP_014275.3_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:290154-291632:+ | gene-YNL124W_ZTW1 | rna-NM_001182962.3_ZTW1 | cds-NP_014275.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:391112-392600:+ | gene-YNL124W_Sparadoxus | rna-NM_001182962.3_Sparadoxus | cds-NP_014275.3_Sparadoxus | 83.1 | 97.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |