Gene name: NAB6
Reference locus (S288C): YML117W
Gene biotype: protein_coding
Description: Putative RNA-binding protein; associates with mRNAs encoding cell wall proteins in high-throughput studies; deletion mutants display increased sensitivity to some cell wall disrupting agents; expression negatively regulated by cAMP
Top 10 interactors (score): PUB1 (0.785); YML116W-A (0.769); YOL159C-A (0.75); TIF4631 (0.749); TIF4632 (0.746); YML119W (0.745); YBR287W (0.745); SUP35 (0.712); RGD2 (0.705); ECM9 (0.677); HOG1 (0.657); HEK2 (0.643); PUF3 (0.642); CBC2 (0.637); PBP2 (0.633); YPL261C (0.62); DIT1 (0.618); EST2 (0.616); CDC33 (0.611); PAB1 (0.607)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:27943-31347:+ | gene-YML117W_AKU4011 | rna-NM_001182479.1_AKU4011 | cds-NP_013589.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:444823-448227:- | gene-YML117W_BG1 | rna-NM_001182479.1_BG1 | cds-NP_013589.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:34158-37562:+ | gene-YML117W_Bruggeman | rna-NM_001182479.1_Bruggeman | cds-NP_013589.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:35764-39168:+ | gene-YML117W_CAT1 | rna-NM_001182479.1_CAT1 | cds-NP_013589.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:27942-31346:+ | gene-YML117W_CBS1585 | rna-NM_001182479.1_CBS1585 | cds-NP_013589.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:33915-37319:+ | gene-YML117W_CBS436 | rna-NM_001182479.1_CBS436 | cds-NP_013589.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:28705-32109:+ | gene-YML117W_CBS6412 | rna-NM_001182479.1_CBS6412 | cds-NP_013589.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:27169-30573:+ | gene-YML117W_CBS6413 | rna-NM_001182479.1_CBS6413 | cds-NP_013589.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:28758-32162:+ | gene-YML117W_CENPK1137D | rna-NM_001182479.1_CENPK1137D | cds-NP_013589.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:28458-31862:+ | gene-YML117W_EthanolRed | rna-NM_001182479.1_EthanolRed | cds-NP_013589.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:28735-32139:+ | gene-YML117W_FaliES1 | rna-NM_001182479.1_FaliES1 | cds-NP_013589.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000345.1:58093-61497:- | gene-YML117W_JAY291 | rna-NM_001182479.1_JAY291 | cds-NP_013589.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:32181-35585:+ | gene-YML117W_MUCL30387 | rna-NM_001182479.1_MUCL30387 | cds-NP_013589.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:35852-39256:+ | gene-YML117W_MUCL30388 | rna-NM_001182479.1_MUCL30388 | cds-NP_013589.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:27957-31361:+ | gene-YML117W_MUCL39482 | rna-NM_001182479.1_MUCL39482 | cds-NP_013589.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:31624-35028:+ | gene-YML117W_MUCL42920 | rna-NM_001182479.1_MUCL42920 | cds-NP_013589.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:34197-37601:+ | gene-YML117W_NCIM3186 | rna-NM_001182479.1_NCIM3186 | cds-NP_013589.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:28752-32156:+ | gene-YML117W_NCYC1407 | rna-NM_001182479.1_NCYC1407 | cds-NP_013589.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:34145-37549:+ | gene-YML117W_PE2H3 | rna-NM_001182479.1_PE2H3 | cds-NP_013589.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:34083-37487:+ | gene-YML117W_PE2H4 | rna-NM_001182479.1_PE2H4 | cds-NP_013589.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:34243-37647:+ | gene-YML117W_S288C | rna-NM_001182479.1_S288C | cds-NP_013589.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000054.1:26189-29593:+ | gene-YML117W_SA1 | rna-NM_001182479.1_SA1 | cds-NP_013589.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:28033-31437:+ | gene-YML117W_ThermosaccDry | rna-NM_001182479.1_ThermosaccDry | cds-NP_013589.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:32434-35838:+ | gene-YML117W_VR1 | rna-NM_001182479.1_VR1 | cds-NP_013589.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:7515-10919:+ | gene-YML117W_ZTW1 | rna-NM_001182479.1_ZTW1 | cds-NP_013589.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:39044-42451:+ | gene-YML117W_Sparadoxus | rna-NM_001182479.1_Sparadoxus | cds-NP_013589.1_Sparadoxus | 89.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |