Gene name: MUD2
Reference locus (S288C): YKL074C
Gene biotype: protein_coding
Description: Splicing factor MUD2; Protein involved in early pre-mRNA splicing; component of the pre-mRNA-U1 snRNP complex, the commitment complex; interacts with Msl5p/BBP splicing factor and Sub2p; similar to metazoan splicing factor U2AF65
Top 10 interactors (score): CEF1 (0.999); HSH155 (0.999); MSL5 (0.999); SNP1 (0.999); YHC1 (0.999); NAM8 (0.998); PRP11 (0.997); CBC2 (0.997); LEA1 (0.997); PRP39 (0.994); LUC7 (0.99); SNU56 (0.99); SKY1 (0.99); PRP19 (0.988); SUB2 (0.987); PRP40 (0.986); SMD3 (0.985); CLF1 (0.984); MUD1 (0.979); CUS2 (0.979)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:281168-282751:- | gene-YKL074C_AKU4011 | rna-NM_001179640.1_AKU4011 | cds-NP_012849.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:361991-363574:+ | gene-YKL074C_BG1 | rna-NM_001179640.1_BG1 | cds-NP_012849.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:299333-300916:- | gene-YKL074C_Bruggeman | rna-NM_001179640.1_Bruggeman | cds-NP_012849.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:294138-295721:- | gene-YKL074C_CAT1 | rna-NM_001179640.1_CAT1 | cds-NP_012849.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:293409-294992:- | gene-YKL074C_CBS1585 | rna-NM_001179640.1_CBS1585 | cds-NP_012849.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:292002-293585:- | gene-YKL074C_CBS436 | rna-NM_001179640.1_CBS436 | cds-NP_012849.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:278036-279619:- | gene-YKL074C_CBS6412 | rna-NM_001179640.1_CBS6412 | cds-NP_012849.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:293863-295446:- | gene-YKL074C_CBS6413 | rna-NM_001179640.1_CBS6413 | cds-NP_012849.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:294253-295836:- | gene-YKL074C_CENPK1137D | rna-NM_001179640.1_CENPK1137D | cds-NP_012849.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:291859-293442:- | gene-YKL074C_EthanolRed | rna-NM_001179640.1_EthanolRed | cds-NP_012849.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:292671-294254:- | gene-YKL074C_FaliES1 | rna-NM_001179640.1_FaliES1 | cds-NP_012849.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000357.1:115000-116583:- | gene-YKL074C_JAY291 | rna-NM_001179640.1_JAY291 | cds-NP_012849.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:301134-302717:- | gene-YKL074C_MUCL30387 | rna-NM_001179640.1_MUCL30387 | cds-NP_012849.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:295529-297112:- | gene-YKL074C_MUCL30388 | rna-NM_001179640.1_MUCL30388 | cds-NP_012849.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:293194-294777:- | gene-YKL074C_MUCL39482 | rna-NM_001179640.1_MUCL39482 | cds-NP_012849.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:297823-299406:- | gene-YKL074C_MUCL42920 | rna-NM_001179640.1_MUCL42920 | cds-NP_012849.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:294599-296182:- | gene-YKL074C_NCIM3186 | rna-NM_001179640.1_NCIM3186 | cds-NP_012849.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:293389-294972:- | gene-YKL074C_NCYC1407 | rna-NM_001179640.1_NCYC1407 | cds-NP_012849.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:300478-302061:- | gene-YKL074C_PE2H3 | rna-NM_001179640.1_PE2H3 | cds-NP_012849.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:296765-298348:- | gene-YKL074C_PE2H4 | rna-NM_001179640.1_PE2H4 | cds-NP_012849.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:294610-296193:- | gene-YKL074C_S288C | rna-NM_001179640.1_S288C | cds-NP_012849.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:210738-212321:- | gene-YKL074C_SA1 | rna-NM_001179640.1_SA1 | cds-NP_012849.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:293380-294963:- | gene-YKL074C_ThermosaccDry | rna-NM_001179640.1_ThermosaccDry | cds-NP_012849.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:292738-294321:- | gene-YKL074C_VR1 | rna-NM_001179640.1_VR1 | cds-NP_012849.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:291939-293522:- | gene-YKL074C_ZTW1 | rna-NM_001179640.1_ZTW1 | cds-NP_012849.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:308871-310454:- | gene-YKL074C_Sparadoxus | rna-NM_001179640.1_Sparadoxus | cds-NP_012849.1_Sparadoxus | 86.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |