Gene name: MUD1
Reference locus (S288C): YBR119W
Gene biotype: protein_coding
Description: U1 snRNP A protein; homolog of human U1-A; involved in nuclear mRNA splicing; Belongs to the RRM U1 A/B'' family
Top 10 interactors (score): SNU71 (0.999); SNU66 (0.999); LEA1 (0.999); NAM8 (0.999); SNP1 (0.999); PRP42 (0.999); SNU56 (0.999); YHC1 (0.998); LUC7 (0.998); PRP40 (0.998); PRP39 (0.998); SMB1 (0.998); SMX2 (0.998); SMD3 (0.997); SMD1 (0.997); SMD2 (0.996); SMX3 (0.996); SME1 (0.996); CBC2 (0.988); STO1 (0.981)
Homologues (species, bitscore): SNRPA (Homo sapiens, 54.3); Snrpa (Mus musculus, 53.5); snrpa (Danio rerio, 50.4); snrpa (Xenopus tropicalis, 52.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:462220-463205:+ | gene-YBR119W_AKU4011 | rna-NM_001178467.1_AKU4011 | cds-NP_009677.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:452760-453745:+ | gene-YBR119W_BG1 | rna-NM_001178467.1_BG1 | cds-NP_009677.1_BG1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:463996-464981:+ | gene-YBR119W_Bruggeman | rna-NM_001178467.1_Bruggeman | cds-NP_009677.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:467163-468148:+ | gene-YBR119W_CAT1 | rna-NM_001178467.1_CAT1 | cds-NP_009677.1_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:454004-454989:+ | gene-YBR119W_CBS1585 | rna-NM_001178467.1_CBS1585 | cds-NP_009677.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:462075-463060:+ | gene-YBR119W_CBS436 | rna-NM_001178467.1_CBS436 | cds-NP_009677.1_CBS436 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:551867-552852:+ | gene-YBR119W_CBS6412 | rna-NM_001178467.1_CBS6412 | cds-NP_009677.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:459632-460617:+ | gene-YBR119W_CBS6413 | rna-NM_001178467.1_CBS6413 | cds-NP_009677.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:473110-474095:+ | gene-YBR119W_CENPK1137D | rna-NM_001178467.1_CENPK1137D | cds-NP_009677.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:588242-589227:+ | gene-YBR119W_EthanolRed | rna-NM_001178467.1_EthanolRed | cds-NP_009677.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:478259-479244:+ | gene-YBR119W_FaliES1 | rna-NM_001178467.1_FaliES1 | cds-NP_009677.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000444.1:1665-2650:+ | gene-YBR119W_JAY291 | rna-NM_001178467.1_JAY291 | cds-NP_009677.1_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:466904-467889:+ | gene-YBR119W_MUCL30387 | rna-NM_001178467.1_MUCL30387 | cds-NP_009677.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:465256-466241:+ | gene-YBR119W_MUCL30388 | rna-NM_001178467.1_MUCL30388 | cds-NP_009677.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:452397-453382:+ | gene-YBR119W_MUCL39482 | rna-NM_001178467.1_MUCL39482 | cds-NP_009677.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:462311-463296:+ | gene-YBR119W_MUCL42920 | rna-NM_001178467.1_MUCL42920 | cds-NP_009677.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:479135-480120:+ | gene-YBR119W_NCIM3186 | rna-NM_001178467.1_NCIM3186 | cds-NP_009677.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:454925-455910:+ | gene-YBR119W_NCYC1407 | rna-NM_001178467.1_NCYC1407 | cds-NP_009677.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:467503-468488:+ | gene-YBR119W_PE2H3 | rna-NM_001178467.1_PE2H3 | cds-NP_009677.1_PE2H3 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:465179-466164:+ | gene-YBR119W_PE2H4 | rna-NM_001178467.1_PE2H4 | cds-NP_009677.1_PE2H4 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:479338-480323:+ | gene-YBR119W_S288C | rna-NM_001178467.1_S288C | cds-NP_009677.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:449-1434:+ | gene-YBR119W_SA1 | rna-NM_001178467.1_SA1 | cds-NP_009677.1_SA1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:477266-478251:+ | gene-YBR119W_ThermosaccDry | rna-NM_001178467.1_ThermosaccDry | cds-NP_009677.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:458770-459755:+ | gene-YBR119W_VR1 | rna-NM_001178467.1_VR1 | cds-NP_009677.1_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:452413-453398:+ | gene-YBR119W_ZTW1 | rna-NM_001178467.1_ZTW1 | cds-NP_009677.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:489616-490608:+ | gene-YBR119W_Sparadoxus | rna-NM_001178467.1_Sparadoxus | cds-NP_009677.1_Sparadoxus | 84.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |