MUD1 (YBR119W)


Gene profile

Gene name: MUD1
Reference locus (S288C): YBR119W
Gene biotype: protein_coding

Description: U1 snRNP A protein; homolog of human U1-A; involved in nuclear mRNA splicing; Belongs to the RRM U1 A/B'' family

Top 10 interactors (score): SNU71 (0.999); SNU66 (0.999); LEA1 (0.999); NAM8 (0.999); SNP1 (0.999); PRP42 (0.999); SNU56 (0.999); YHC1 (0.998); LUC7 (0.998); PRP40 (0.998); PRP39 (0.998); SMB1 (0.998); SMX2 (0.998); SMD3 (0.997); SMD1 (0.997); SMD2 (0.996); SMX3 (0.996); SME1 (0.996); CBC2 (0.988); STO1 (0.981)

Homologues (species, bitscore): SNRPA (Homo sapiens, 54.3); Snrpa (Mus musculus, 53.5); snrpa (Danio rerio, 50.4); snrpa (Xenopus tropicalis, 52.4)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005296.1:462220-463205:+ gene-YBR119W_AKU4011 rna-NM_001178467.1_AKU4011 cds-NP_009677.1_AKU4011 99.7 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000179.1:452760-453745:+ gene-YBR119W_BG1 rna-NM_001178467.1_BG1 cds-NP_009677.1_BG1 98.6 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005504.1:463996-464981:+ gene-YBR119W_Bruggeman rna-NM_001178467.1_Bruggeman cds-NP_009677.1_Bruggeman 99.4 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005520.1:467163-468148:+ gene-YBR119W_CAT1 rna-NM_001178467.1_CAT1 cds-NP_009677.1_CAT1 98.9 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005360.1:454004-454989:+ gene-YBR119W_CBS1585 rna-NM_001178467.1_CBS1585 cds-NP_009677.1_CBS1585 99.8 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005344.1:462075-463060:+ gene-YBR119W_CBS436 rna-NM_001178467.1_CBS436 cds-NP_009677.1_CBS436 98.6 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005328.1:551867-552852:+ gene-YBR119W_CBS6412 rna-NM_001178467.1_CBS6412 cds-NP_009677.1_CBS6412 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005312.1:459632-460617:+ gene-YBR119W_CBS6413 rna-NM_001178467.1_CBS6413 cds-NP_009677.1_CBS6413 99.8 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001523.1:473110-474095:+ gene-YBR119W_CENPK1137D rna-NM_001178467.1_CENPK1137D cds-NP_009677.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005472.1:588242-589227:+ gene-YBR119W_EthanolRed rna-NM_001178467.1_EthanolRed cds-NP_009677.1_EthanolRed 99.6 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005536.1:478259-479244:+ gene-YBR119W_FaliES1 rna-NM_001178467.1_FaliES1 cds-NP_009677.1_FaliES1 99.6 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000444.1:1665-2650:+ gene-YBR119W_JAY291 rna-NM_001178467.1_JAY291 cds-NP_009677.1_JAY291 98.8 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005408.1:466904-467889:+ gene-YBR119W_MUCL30387 rna-NM_001178467.1_MUCL30387 cds-NP_009677.1_MUCL30387 98.9 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005440.1:465256-466241:+ gene-YBR119W_MUCL30388 rna-NM_001178467.1_MUCL30388 cds-NP_009677.1_MUCL30388 99.1 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005280.1:452397-453382:+ gene-YBR119W_MUCL39482 rna-NM_001178467.1_MUCL39482 cds-NP_009677.1_MUCL39482 99.8 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005424.1:462311-463296:+ gene-YBR119W_MUCL42920 rna-NM_001178467.1_MUCL42920 cds-NP_009677.1_MUCL42920 99.7 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011811.1:479135-480120:+ gene-YBR119W_NCIM3186 rna-NM_001178467.1_NCIM3186 cds-NP_009677.1_NCIM3186 99.6 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005264.1:454925-455910:+ gene-YBR119W_NCYC1407 rna-NM_001178467.1_NCYC1407 cds-NP_009677.1_NCYC1407 99.8 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994141.1:467503-468488:+ gene-YBR119W_PE2H3 rna-NM_001178467.1_PE2H3 cds-NP_009677.1_PE2H3 98.8 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999873.1:465179-466164:+ gene-YBR119W_PE2H4 rna-NM_001178467.1_PE2H4 cds-NP_009677.1_PE2H4 98.8 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001134.8:479338-480323:+ gene-YBR119W_S288C rna-NM_001178467.1_S288C cds-NP_009677.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000032.1:449-1434:+ gene-YBR119W_SA1 rna-NM_001178467.1_SA1 cds-NP_009677.1_SA1 98.7 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005488.1:477266-478251:+ gene-YBR119W_ThermosaccDry rna-NM_001178467.1_ThermosaccDry cds-NP_009677.1_ThermosaccDry 99.6 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005456.1:458770-459755:+ gene-YBR119W_VR1 rna-NM_001178467.1_VR1 cds-NP_009677.1_VR1 98.7 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000003.1:452413-453398:+ gene-YBR119W_ZTW1 rna-NM_001178467.1_ZTW1 cds-NP_009677.1_ZTW1 99.7 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047488.1:489616-490608:+ gene-YBR119W_Sparadoxus rna-NM_001178467.1_Sparadoxus cds-NP_009677.1_Sparadoxus 84.8 99.5 Verified 1 1 1 False True False False False

Additional files