Gene name: MTR3
Reference locus (S288C): YGR158C
Gene biotype: protein_coding
Description: Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hMtr3p (EXOSC6)
Top 10 interactors (score): CSL4 (0.999); RRP4 (0.999); RRP40 (0.999); RRP43 (0.999); RRP6 (0.999); SKI7 (0.999); MPP6 (0.999); RRP46 (0.999); SKI6 (0.999); DIS3 (0.999); RRP45 (0.999); MTR4 (0.999); RRP42 (0.999); LRP1 (0.997); SKI2 (0.98); ENP1 (0.966); IMP3 (0.955); SKI3 (0.949); IMP4 (0.948); UTP7 (0.947)
Homologues (species, bitscore): exosc6 (Danio rerio, 57.8); rarg (Xenopus tropicalis, 53.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:784888-785640:- | gene-YGR158C_AKU4011 | rna-NM_001181287.3_AKU4011 | cds-NP_011674.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:63034-63786:- | gene-YGR158C_BG1 | rna-NM_001181287.3_BG1 | cds-NP_011674.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:790588-791340:- | gene-YGR158C_Bruggeman | rna-NM_001181287.3_Bruggeman | cds-NP_011674.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:786656-787408:- | gene-YGR158C_CAT1 | rna-NM_001181287.3_CAT1 | cds-NP_011674.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:785623-786375:- | gene-YGR158C_CBS1585 | rna-NM_001181287.3_CBS1585 | cds-NP_011674.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:789509-790261:- | gene-YGR158C_CBS436 | rna-NM_001181287.3_CBS436 | cds-NP_011674.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:776642-777394:- | gene-YGR158C_CBS6412 | rna-NM_001181287.3_CBS6412 | cds-NP_011674.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:782474-783226:- | gene-YGR158C_CBS6413 | rna-NM_001181287.3_CBS6413 | cds-NP_011674.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:805002-805754:- | gene-YGR158C_CENPK1137D | rna-NM_001181287.3_CENPK1137D | cds-NP_011674.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:771188-771940:- | gene-YGR158C_EthanolRed | rna-NM_001181287.3_EthanolRed | cds-NP_011674.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:775392-776144:- | gene-YGR158C_FaliES1 | rna-NM_001181287.3_FaliES1 | cds-NP_011674.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000112.1:17799-18551:- | gene-YGR158C_JAY291 | rna-NM_001181287.3_JAY291 | cds-NP_011674.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:788327-789079:- | gene-YGR158C_MUCL30387 | rna-NM_001181287.3_MUCL30387 | cds-NP_011674.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:788025-788777:- | gene-YGR158C_MUCL30388 | rna-NM_001181287.3_MUCL30388 | cds-NP_011674.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:781189-781941:- | gene-YGR158C_MUCL39482 | rna-NM_001181287.3_MUCL39482 | cds-NP_011674.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:796137-796889:- | gene-YGR158C_MUCL42920 | rna-NM_001181287.3_MUCL42920 | cds-NP_011674.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:805269-806021:- | gene-YGR158C_NCIM3186 | rna-NM_001181287.3_NCIM3186 | cds-NP_011674.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:776292-777044:- | gene-YGR158C_NCYC1407 | rna-NM_001181287.3_NCYC1407 | cds-NP_011674.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:795502-796254:- | gene-YGR158C_PE2H3 | rna-NM_001181287.3_PE2H3 | cds-NP_011674.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:800612-801364:- | gene-YGR158C_PE2H4 | rna-NM_001181287.3_PE2H4 | cds-NP_011674.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:805269-806021:- | gene-YGR158C_S288C | rna-NM_001181287.3_S288C | cds-NP_011674.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000035.1:40419-41171:- | gene-YGR158C_SA1 | rna-NM_001181287.3_SA1 | cds-NP_011674.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:795899-796651:- | gene-YGR158C_ThermosaccDry | rna-NM_001181287.3_ThermosaccDry | cds-NP_011674.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:900402-901154:- | gene-YGR158C_VR1 | rna-NM_001181287.3_VR1 | cds-NP_011674.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:97839-98591:- | gene-YGR158C_ZTW1 | rna-NM_001181287.3_ZTW1 | cds-NP_011674.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:785419-786172:- | gene-YGR158C_Sparadoxus | rna-NM_001181287.3_Sparadoxus | cds-NP_011674.3_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |