Gene name: MSY1
Reference locus (S288C): YPL097W
Gene biotype: protein_coding
Description: Tyrosine--tRNA ligase, mitochondrial; Mitochondrial tyrosyl-tRNA synthetase
Top 10 interactors (score): TYS1 (0.989); NAM2 (0.98); MSE1 (0.975); MSF1 (0.974); KRS1 (0.974); DIA4 (0.97); MSW1 (0.968); DTD1 (0.953); WRS1 (0.951); MSK1 (0.942); MEF1 (0.941); MSD1 (0.936); ISM1 (0.929); GRS1 (0.928); MSM1 (0.921); SES1 (0.919); RSM26 (0.915); TUF1 (0.91); NAM9 (0.907); ALA1 (0.907)
Homologues (species, bitscore): YARS2 (Homo sapiens, 263.1); Yars2 (Mus musculus, 260.8); Yars2 (Danio rerio, 266.2); yars2 (Xenopus tropicalis, 119.4); Aats-tyr-m (Drosophila melanogaster, 292.0); yars-1 (Caenorhabditis elegans, 166.8); EMB2768 (Arabidopsis thaliana, 285.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:342594-344072:+ | gene-YPL097W_AKU4011 | rna-NM_001183911.1_AKU4011 | cds-NP_015228.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:548348-549826:+ | gene-YPL097W_BG1 | rna-NM_001183911.1_BG1 | cds-NP_015228.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:368600-370078:+ | gene-YPL097W_Bruggeman | rna-NM_001183911.1_Bruggeman | cds-NP_015228.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:366064-367542:+ | gene-YPL097W_CAT1 | rna-NM_001183911.1_CAT1 | cds-NP_015228.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:346667-348145:+ | gene-YPL097W_CBS1585 | rna-NM_001183911.1_CBS1585 | cds-NP_015228.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:361339-362817:+ | gene-YPL097W_CBS436 | rna-NM_001183911.1_CBS436 | cds-NP_015228.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:351336-352814:+ | gene-YPL097W_CBS6412 | rna-NM_001183911.1_CBS6412 | cds-NP_015228.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:343303-344781:+ | gene-YPL097W_CBS6413 | rna-NM_001183911.1_CBS6413 | cds-NP_015228.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:364900-366378:+ | gene-YPL097W_CENPK1137D | rna-NM_001183911.1_CENPK1137D | cds-NP_015228.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:341286-342764:+ | gene-YPL097W_EthanolRed | rna-NM_001183911.1_EthanolRed | cds-NP_015228.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:348878-350356:+ | gene-YPL097W_FaliES1 | rna-NM_001183911.1_FaliES1 | cds-NP_015228.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:15462-16940:- | gene-YPL097W_JAY291 | rna-NM_001183911.1_JAY291 | cds-NP_015228.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:359838-361316:+ | gene-YPL097W_MUCL30387 | rna-NM_001183911.1_MUCL30387 | cds-NP_015228.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:584356-585834:+ | gene-YPL097W_MUCL30388 | rna-NM_001183911.1_MUCL30388 | cds-NP_015228.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:339996-341474:+ | gene-YPL097W_MUCL39482 | rna-NM_001183911.1_MUCL39482 | cds-NP_015228.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:397684-399162:+ | gene-YPL097W_MUCL42920 | rna-NM_001183911.1_MUCL42920 | cds-NP_015228.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:364935-366413:+ | gene-YPL097W_NCIM3186 | rna-NM_001183911.1_NCIM3186 | cds-NP_015228.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:346449-347927:+ | gene-YPL097W_NCYC1407 | rna-NM_001183911.1_NCYC1407 | cds-NP_015228.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:353940-355418:+ | gene-YPL097W_PE2H3 | rna-NM_001183911.1_PE2H3 | cds-NP_015228.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:353563-355041:+ | gene-YPL097W_PE2H4 | rna-NM_001183911.1_PE2H4 | cds-NP_015228.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:364952-366430:+ | gene-YPL097W_S288C | rna-NM_001183911.1_S288C | cds-NP_015228.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:7249-8727:- | gene-YPL097W_SA1 | rna-NM_001183911.1_SA1 | cds-NP_015228.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:348676-350154:+ | gene-YPL097W_ThermosaccDry | rna-NM_001183911.1_ThermosaccDry | cds-NP_015228.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:363651-365129:+ | gene-YPL097W_VR1 | rna-NM_001183911.1_VR1 | cds-NP_015228.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:347997-349475:+ | gene-YPL097W_ZTW1 | rna-NM_001183911.1_ZTW1 | cds-NP_015228.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:349658-351139:+ | gene-YPL097W_Sparadoxus | rna-NM_001183911.1_Sparadoxus | cds-NP_015228.1_Sparadoxus | 88.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |