Gene name: MSS18
Reference locus (S288C): YPR134W
Gene biotype: protein_coding
Description: Nuclear encoded protein needed for splicing of mitochondrial intron; required for efficient splicing of mitochondrial COX1 aI5beta intron; mss18 mutations block cleavage of 5' exon - intron junction; phenotype of intronless strain suggests additional functions
Top 10 interactors (score): SUV3 (0.899); AI5_BETA (0.894); MRS1 (0.886); PET54 (0.842); SLM3 (0.716); MTO1 (0.699); YMR253C (0.672); TAF2 (0.652); MSS116 (0.647); YLR050C (0.574); YPL162C (0.568); AI5_ALPHA (0.526); PRP46 (0.495); CWC22 (0.495); PRP19 (0.495); COX1 (0.454); COR1 (0.432); SKY1 (0.4)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:769738-770544:+ | gene-YPR134W_AKU4011 | rna-NM_001184231.1_AKU4011 | cds-NP_015460.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:126822-127628:- | gene-YPR134W_BG1 | rna-NM_001184231.1_BG1 | cds-NP_015460.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:850388-851194:+ | gene-YPR134W_Bruggeman | rna-NM_001184231.1_Bruggeman | cds-NP_015460.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:892304-893110:+ | gene-YPR134W_CAT1 | rna-NM_001184231.1_CAT1 | cds-NP_015460.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:773994-774800:+ | gene-YPR134W_CBS1585 | rna-NM_001184231.1_CBS1585 | cds-NP_015460.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:788467-789273:+ | gene-YPR134W_CBS436 | rna-NM_001184231.1_CBS436 | cds-NP_015460.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:776718-777524:+ | gene-YPR134W_CBS6412 | rna-NM_001184231.1_CBS6412 | cds-NP_015460.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:771440-772246:+ | gene-YPR134W_CBS6413 | rna-NM_001184231.1_CBS6413 | cds-NP_015460.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:798106-798912:+ | gene-YPR134W_CENPK1137D | rna-NM_001184231.1_CENPK1137D | cds-NP_015460.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1091904-1092710:+ | gene-YPR134W_EthanolRed | rna-NM_001184231.1_EthanolRed | cds-NP_015460.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:771451-772257:+ | gene-YPR134W_FaliES1 | rna-NM_001184231.1_FaliES1 | cds-NP_015460.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000036.1:28728-29534:+ | gene-YPR134W_JAY291 | rna-NM_001184231.1_JAY291 | cds-NP_015460.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:790579-791385:+ | gene-YPR134W_MUCL30387 | rna-NM_001184231.1_MUCL30387 | cds-NP_015460.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:790544-791350:+ | gene-YPR134W_MUCL30388 | rna-NM_001184231.1_MUCL30388 | cds-NP_015460.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:766502-767308:+ | gene-YPR134W_MUCL39482 | rna-NM_001184231.1_MUCL39482 | cds-NP_015460.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:830299-831105:+ | gene-YPR134W_MUCL42920 | rna-NM_001184231.1_MUCL42920 | cds-NP_015460.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:798034-798840:+ | gene-YPR134W_NCIM3186 | rna-NM_001184231.1_NCIM3186 | cds-NP_015460.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:775095-775901:+ | gene-YPR134W_NCYC1407 | rna-NM_001184231.1_NCYC1407 | cds-NP_015460.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:781816-782622:+ | gene-YPR134W_PE2H3 | rna-NM_001184231.1_PE2H3 | cds-NP_015460.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:781464-782270:+ | gene-YPR134W_PE2H4 | rna-NM_001184231.1_PE2H4 | cds-NP_015460.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:798051-798857:+ | gene-YPR134W_S288C | rna-NM_001184231.1_S288C | cds-NP_015460.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:95848-96654:+ | gene-YPR134W_SA1 | rna-NM_001184231.1_SA1 | cds-NP_015460.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:770896-771702:+ | gene-YPR134W_ThermosaccDry | rna-NM_001184231.1_ThermosaccDry | cds-NP_015460.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:792720-793526:+ | gene-YPR134W_VR1 | rna-NM_001184231.1_VR1 | cds-NP_015460.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:774651-775457:+ | gene-YPR134W_ZTW1 | rna-NM_001184231.1_ZTW1 | cds-NP_015460.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:776607-777413:+ | gene-YPR134W_Sparadoxus | rna-NM_001184231.1_Sparadoxus | cds-NP_015460.1_Sparadoxus | 82.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |