Gene name: MSS116
Reference locus (S288C): YDR194C
Gene biotype: protein_coding
Description: ATP-dependent RNA helicase MSS116, mitochondrial; Mitochondrial transcription elongation factor; DEAD-box protein; required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing; promotes RNA folding by stabilizing an early assembly intermediate
Top 10 interactors (score): NOP58 (0.995); DRS1 (0.988); SUV3 (0.971); UTP21 (0.967); MTR4 (0.962); RPA135 (0.962); CDC33 (0.947); GAR1 (0.94); ENP1 (0.928); NOP7 (0.927); RPA190 (0.927); NOP15 (0.92); NOP56 (0.92); UTP22 (0.92); KRE33 (0.917); MRT4 (0.916); UTP5 (0.911); PUF6 (0.91); NOC2 (0.91); DIP2 (0.908)
Homologues (species, bitscore): DDX18 (Homo sapiens, 209.9); Ddx18 (Mus musculus, 216.5); ddx18 (Danio rerio, 213.8); ddx49 (Xenopus tropicalis, 189.5); pit (Drosophila melanogaster, 201.4); B0511.6 (Caenorhabditis elegans, 188.0); AT1G63250 (Arabidopsis thaliana, 213.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:814484-816478:- | gene-YDR194C_AKU4011 | rna-NM_001180502.1_AKU4011 | cds-NP_010480.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:309339-311333:+ | gene-YDR194C_BG1 | rna-NM_001180502.1_BG1 | cds-NP_010480.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:846896-848890:- | gene-YDR194C_Bruggeman | rna-NM_001180502.1_Bruggeman | cds-NP_010480.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:834166-836160:- | gene-YDR194C_CAT1 | rna-NM_001180502.1_CAT1 | cds-NP_010480.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:804844-806838:- | gene-YDR194C_CBS1585 | rna-NM_001180502.1_CBS1585 | cds-NP_010480.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:833850-835844:- | gene-YDR194C_CBS436 | rna-NM_001180502.1_CBS436 | cds-NP_010480.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:801651-803645:- | gene-YDR194C_CBS6412 | rna-NM_001180502.1_CBS6412 | cds-NP_010480.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:832195-834189:- | gene-YDR194C_CBS6413 | rna-NM_001180502.1_CBS6413 | cds-NP_010480.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:844784-846778:- | gene-YDR194C_CENPK1137D | rna-NM_001180502.1_CENPK1137D | cds-NP_010480.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:815236-817230:- | gene-YDR194C_EthanolRed | rna-NM_001180502.1_EthanolRed | cds-NP_010480.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:823448-825442:- | gene-YDR194C_FaliES1 | rna-NM_001180502.1_FaliES1 | cds-NP_010480.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:23909-25903:+ | gene-YDR194C_JAY291 | rna-NM_001180502.1_JAY291 | cds-NP_010480.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:832549-834543:- | gene-YDR194C_MUCL30387 | rna-NM_001180502.1_MUCL30387 | cds-NP_010480.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:820798-822792:- | gene-YDR194C_MUCL30388 | rna-NM_001180502.1_MUCL30388 | cds-NP_010480.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:806291-808285:- | gene-YDR194C_MUCL39482 | rna-NM_001180502.1_MUCL39482 | cds-NP_010480.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:744991-746985:- | gene-YDR194C_MUCL42920 | rna-NM_001180502.1_MUCL42920 | cds-NP_010480.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:845875-847869:- | gene-YDR194C_NCIM3186 | rna-NM_001180502.1_NCIM3186 | cds-NP_010480.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:809425-811419:- | gene-YDR194C_NCYC1407 | rna-NM_001180502.1_NCYC1407 | cds-NP_010480.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:826177-828171:- | gene-YDR194C_PE2H3 | rna-NM_001180502.1_PE2H3 | cds-NP_010480.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:825482-827476:- | gene-YDR194C_PE2H4 | rna-NM_001180502.1_PE2H4 | cds-NP_010480.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:845952-847946:- | gene-YDR194C_S288C | rna-NM_001180502.1_S288C | cds-NP_010480.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:191661-193655:- | gene-YDR194C_SA1 | rna-NM_001180502.1_SA1 | cds-NP_010480.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:821603-823597:- | gene-YDR194C_ThermosaccDry | rna-NM_001180502.1_ThermosaccDry | cds-NP_010480.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:836830-838824:- | gene-YDR194C_VR1 | rna-NM_001180502.1_VR1 | cds-NP_010480.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:84321-86315:- | gene-YDR194C_ZTW1 | rna-NM_001180502.1_ZTW1 | cds-NP_010480.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:826468-828468:- | gene-YDR194C_Sparadoxus | rna-NM_001180502.1_Sparadoxus | cds-NP_010480.1_Sparadoxus | 89.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |