Gene name: MSS11
Reference locus (S288C): YMR164C
Gene biotype: protein_coding
Description: Transcription activator MSS11; Transcription factor; involved in regulation of invasive growth and starch degradation; controls the activation of FLO11 and STA2 in response to nutritional signals; forms a heterodimer with Flo8p that interacts with the Swi/Snf complex during transcriptional activation of FLO1, FLO11, and STA1
Top 10 interactors (score): FLO8 (0.973); STE12 (0.969); MSN1 (0.962); MFG1 (0.94); FLO11 (0.934); TEC1 (0.911); SFL1 (0.836); FLO1 (0.749); PHD1 (0.74); FLO10 (0.716); TPK2 (0.678); NRG2 (0.671); GTS1 (0.666); DSS4 (0.65); KSS1 (0.629); NRG1 (0.614); MDH2 (0.611); FLO9 (0.591); CSC1 (0.591); MEP2 (0.575)
Homologues (species, bitscore): SMARCA2 (Homo sapiens, 57.0); Kmt2d (Mus musculus, 72.4); CG42684 (Drosophila melanogaster, 57.0); LUG (Arabidopsis thaliana, 73.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:626779-629299:- | gene-YMR164C_AKU4011 | rna-NM_001182668.1_AKU4011 | cds-NP_013887.1_AKU4011 | 89.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:43530-45770:+ | gene-YMR164C_BG1 | rna-NM_001182668.1_BG1 | cds-NP_013887.1_BG1 | 97.5 | 98.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:569954-572227:- | gene-YMR164C_Bruggeman | rna-NM_001182668.1_Bruggeman | cds-NP_013887.1_Bruggeman | 97.8 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:572161-574275:- | gene-YMR164C_CAT1 | rna-NM_001182668.1_CAT1 | cds-NP_013887.1_CAT1 | 84.0 | 90.6 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:559704-561980:- | gene-YMR164C_CBS1585 | rna-NM_001182668.1_CBS1585 | cds-NP_013887.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:563572-565845:- | gene-YMR164C_CBS436 | rna-NM_001182668.1_CBS436 | cds-NP_013887.1_CBS436 | 97.6 | 99.2 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:672321-674597:- | gene-YMR164C_CBS6412 | rna-NM_001182668.1_CBS6412 | cds-NP_013887.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:558254-560530:- | gene-YMR164C_CBS6413 | rna-NM_001182668.1_CBS6413 | cds-NP_013887.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:581777-584029:- | gene-YMR164C_CENPK1137D | rna-NM_001182668.1_CENPK1137D | cds-NP_013887.1_CENPK1137D | 97.9 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:619880-622155:- | gene-YMR164C_EthanolRed | rna-NM_001182668.1_EthanolRed | cds-NP_013887.1_EthanolRed | 81.3 | 91.3 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:564868-567309:- | gene-YMR164C_FaliES1 | rna-NM_001182668.1_FaliES1 | cds-NP_013887.1_FaliES1 | 92.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000292.1:10413-12665:+ | gene-YMR164C_JAY291 | rna-NM_001182668.1_JAY291 | cds-NP_013887.1_JAY291 | 97.7 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:564664-567201:- | gene-YMR164C_MUCL30387 | rna-NM_001182668.1_MUCL30387 | cds-NP_013887.1_MUCL30387 | 88.0 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:570188-572854:- | gene-YMR164C_MUCL30388 | rna-NM_001182668.1_MUCL30388 | cds-NP_013887.1_MUCL30388 | 83.3 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:560390-562666:- | gene-YMR164C_MUCL39482 | rna-NM_001182668.1_MUCL39482 | cds-NP_013887.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:567260-569494:- | gene-YMR164C_MUCL42920 | rna-NM_001182668.1_MUCL42920 | cds-NP_013887.1_MUCL42920 | 97.4 | 98.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:587228-589504:- | gene-YMR164C_NCIM3186 | rna-NM_001182668.1_NCIM3186 | cds-NP_013887.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:560092-562368:- | gene-YMR164C_NCYC1407 | rna-NM_001182668.1_NCYC1407 | cds-NP_013887.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:570470-572710:- | gene-YMR164C_PE2H3 | rna-NM_001182668.1_PE2H3 | cds-NP_013887.1_PE2H3 | 97.5 | 98.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:570920-573172:- | gene-YMR164C_PE2H4 | rna-NM_001182668.1_PE2H4 | cds-NP_013887.1_PE2H4 | 97.9 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:587274-589550:- | gene-YMR164C_S288C | rna-NM_001182668.1_S288C | cds-NP_013887.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:216714-219161:+ | gene-YMR164C_SA1 | rna-NM_001182668.1_SA1 | cds-NP_013887.1_SA1 | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:560516-563041:- | gene-YMR164C_ThermosaccDry | rna-NM_001182668.1_ThermosaccDry | cds-NP_013887.1_ThermosaccDry | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:572977-575196:- | gene-YMR164C_VR1 | rna-NM_001182668.1_VR1 | cds-NP_013887.1_VR1 | 96.5 | 97.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:535409-537664:- | gene-YMR164C_ZTW1 | rna-NM_001182668.1_ZTW1 | cds-NP_013887.1_ZTW1 | 97.1 | 98.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:578897-581341:- | gene-YMR164C_Sparadoxus | rna-NM_001182668.1_Sparadoxus | cds-NP_013887.1_Sparadoxus | 75.4 | 95.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |