Gene name: MSS1
Reference locus (S288C): YMR023C
Gene biotype: protein_coding
Description: tRNA modification GTPase MSS1, mitochondrial; Mitochondrial protein; forms a heterodimer complex with Mto1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; similar to human GTPBP3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. TrmE GTPase family
Top 10 interactors (score): MTO1 (0.998); SLM3 (0.992); RIB2 (0.861); ERV46 (0.81); ERV41 (0.81); MRX8 (0.808); NAM2 (0.776); MRPL9 (0.746); RIB1 (0.744); MRPL23 (0.738); MRPL10 (0.736); MTG1 (0.704); ATS1 (0.676); MTG2 (0.674); PUF3 (0.669); DIM1 (0.641); PUS7 (0.64); MRPL4 (0.631); ACP1 (0.629); POL30 (0.625)
Homologues (species, bitscore): GTPBP3 (Homo sapiens, 277.3); Gtpbp3 (Mus musculus, 287.7); gtpbp3 (Danio rerio, 297.0); gtpbp3 (Xenopus tropicalis, 285.4); CG18528 (Drosophila melanogaster, 289.7); F39B2.7 (Caenorhabditis elegans, 228.8); AT1G78010 (Arabidopsis thaliana, 178.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:369044-370624:- | gene-YMR023C_AKU4011 | rna-NM_001182519.1_AKU4011 | cds-NP_013736.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:172233-173813:+ | gene-YMR023C_BG1 | rna-NM_001182519.1_BG1 | cds-NP_013736.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:308982-310562:- | gene-YMR023C_Bruggeman | rna-NM_001182519.1_Bruggeman | cds-NP_013736.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:311496-313076:- | gene-YMR023C_CAT1 | rna-NM_001182519.1_CAT1 | cds-NP_013736.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:301983-303563:- | gene-YMR023C_CBS1585 | rna-NM_001182519.1_CBS1585 | cds-NP_013736.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:307526-309106:- | gene-YMR023C_CBS436 | rna-NM_001182519.1_CBS436 | cds-NP_013736.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:415387-416967:- | gene-YMR023C_CBS6412 | rna-NM_001182519.1_CBS6412 | cds-NP_013736.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:301241-302821:- | gene-YMR023C_CBS6413 | rna-NM_001182519.1_CBS6413 | cds-NP_013736.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:314168-315748:- | gene-YMR023C_CENPK1137D | rna-NM_001182519.1_CENPK1137D | cds-NP_013736.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:301815-303395:- | gene-YMR023C_EthanolRed | rna-NM_001182519.1_EthanolRed | cds-NP_013736.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:304998-306578:- | gene-YMR023C_FaliES1 | rna-NM_001182519.1_FaliES1 | cds-NP_013736.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:130364-131944:+ | gene-YMR023C_JAY291 | rna-NM_001182519.1_JAY291 | cds-NP_013736.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:306943-308523:- | gene-YMR023C_MUCL30387 | rna-NM_001182519.1_MUCL30387 | cds-NP_013736.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:311368-312948:- | gene-YMR023C_MUCL30388 | rna-NM_001182519.1_MUCL30388 | cds-NP_013736.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:302268-303848:- | gene-YMR023C_MUCL39482 | rna-NM_001182519.1_MUCL39482 | cds-NP_013736.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:308083-309663:- | gene-YMR023C_MUCL42920 | rna-NM_001182519.1_MUCL42920 | cds-NP_013736.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:319391-320971:- | gene-YMR023C_NCIM3186 | rna-NM_001182519.1_NCIM3186 | cds-NP_013736.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:302185-303765:- | gene-YMR023C_NCYC1407 | rna-NM_001182519.1_NCYC1407 | cds-NP_013736.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:308128-309708:- | gene-YMR023C_PE2H3 | rna-NM_001182519.1_PE2H3 | cds-NP_013736.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:314223-315803:- | gene-YMR023C_PE2H4 | rna-NM_001182519.1_PE2H4 | cds-NP_013736.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:319437-321017:- | gene-YMR023C_S288C | rna-NM_001182519.1_S288C | cds-NP_013736.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:217249-218829:+ | gene-YMR023C_SA1 | rna-NM_001182519.1_SA1 | cds-NP_013736.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:302067-303647:- | gene-YMR023C_ThermosaccDry | rna-NM_001182519.1_ThermosaccDry | cds-NP_013736.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:306016-307596:- | gene-YMR023C_VR1 | rna-NM_001182519.1_VR1 | cds-NP_013736.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:281082-282662:- | gene-YMR023C_ZTW1 | rna-NM_001182519.1_ZTW1 | cds-NP_013736.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:314889-316472:- | gene-YMR023C_Sparadoxus | rna-NM_001182519.1_Sparadoxus | cds-NP_013736.1_Sparadoxus | 87.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |