Gene name: MSR1
Reference locus (S288C): YHR091C
Gene biotype: protein_coding
Description: Arginine--tRNA ligase, mitochondrial; Mitochondrial arginyl-tRNA synthetase; mutations in human ortholog are associated with pontocerebellar hypoplasia type 6; MSR1 has a paralog, YDR341C, that arose from the whole genome duplication; Belongs to the class-I aminoacyl-tRNA synthetase family
Top 10 interactors (score): MSE1 (0.982); MSD1 (0.975); NAM2 (0.967); GLN4 (0.963); SES1 (0.949); DIA4 (0.947); MSM1 (0.941); CDC60 (0.938); MES1 (0.917); ISM1 (0.912); SEN34 (0.887); GUS1 (0.869); ATE1 (0.855); AIM10 (0.854); MSY1 (0.848); ICP55 (0.845); YHC1 (0.836); RRN3 (0.835); TYS1 (0.833); KRS1 (0.829)
Homologues (species, bitscore): RARS2 (Homo sapiens, 414.1); Rars2 (Mus musculus, 415.6); rars2 (Danio rerio, 385.6); rars2 (Xenopus tropicalis, 350.1); CG10092 (Drosophila melanogaster, 299.3); rars-2 (Caenorhabditis elegans, 213.4); AT1G66530 (Arabidopsis thaliana, 188.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:271250-273181:- | gene-YHR091C_AKU4011 | rna-NM_001179221.1_AKU4011 | cds-NP_011959.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000207.1:2314-4245:- | gene-YHR091C_BG1 | rna-NM_001179221.1_BG1 | cds-NP_011959.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:279076-281007:- | gene-YHR091C_Bruggeman | rna-NM_001179221.1_Bruggeman | cds-NP_011959.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:274217-276148:- | gene-YHR091C_CAT1 | rna-NM_001179221.1_CAT1 | cds-NP_011959.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:270292-272223:- | gene-YHR091C_CBS1585 | rna-NM_001179221.1_CBS1585 | cds-NP_011959.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:268154-270085:- | gene-YHR091C_CBS436 | rna-NM_001179221.1_CBS436 | cds-NP_011959.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:273640-275571:- | gene-YHR091C_CBS6412 | rna-NM_001179221.1_CBS6412 | cds-NP_011959.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:271331-273262:- | gene-YHR091C_CBS6413 | rna-NM_001179221.1_CBS6413 | cds-NP_011959.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:278013-279944:- | gene-YHR091C_CENPK1137D | rna-NM_001179221.1_CENPK1137D | cds-NP_011959.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:330856-332787:- | gene-YHR091C_EthanolRed | rna-NM_001179221.1_EthanolRed | cds-NP_011959.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:271660-273591:- | gene-YHR091C_FaliES1 | rna-NM_001179221.1_FaliES1 | cds-NP_011959.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000394.1:54384-56315:- | gene-YHR091C_JAY291 | rna-NM_001179221.1_JAY291 | cds-NP_011959.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:278573-280504:- | gene-YHR091C_MUCL30387 | rna-NM_001179221.1_MUCL30387 | cds-NP_011959.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:278460-280391:- | gene-YHR091C_MUCL30388 | rna-NM_001179221.1_MUCL30388 | cds-NP_011959.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:270615-272546:- | gene-YHR091C_MUCL39482 | rna-NM_001179221.1_MUCL39482 | cds-NP_011959.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:277362-279293:- | gene-YHR091C_MUCL42920 | rna-NM_001179221.1_MUCL42920 | cds-NP_011959.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:284721-286652:- | gene-YHR091C_NCIM3186 | rna-NM_001179221.1_NCIM3186 | cds-NP_011959.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:273080-275011:- | gene-YHR091C_NCYC1407 | rna-NM_001179221.1_NCYC1407 | cds-NP_011959.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:272749-274680:- | gene-YHR091C_PE2H3 | rna-NM_001179221.1_PE2H3 | cds-NP_011959.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:280196-282127:- | gene-YHR091C_PE2H4 | rna-NM_001179221.1_PE2H4 | cds-NP_011959.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:284839-286770:- | gene-YHR091C_S288C | rna-NM_001179221.1_S288C | cds-NP_011959.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:72215-74146:+ | gene-YHR091C_SA1 | rna-NM_001179221.1_SA1 | cds-NP_011959.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:272751-274682:- | gene-YHR091C_ThermosaccDry | rna-NM_001179221.1_ThermosaccDry | cds-NP_011959.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:280624-282555:- | gene-YHR091C_VR1 | rna-NM_001179221.1_VR1 | cds-NP_011959.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:264304-266235:- | gene-YHR091C_ZTW1 | rna-NM_001179221.1_ZTW1 | cds-NP_011959.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:270028-271959:- | gene-YHR091C_Sparadoxus | rna-NM_001179221.1_Sparadoxus | cds-NP_011959.1_Sparadoxus | 87.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |