Gene name: MSP1
Reference locus (S288C): YGR028W
Gene biotype: protein_coding
Description: Protein MSP1; Highly-conserved N-terminally anchored AAA-ATPase; distributed in the mitochondrial outer membrane and peroxisomes; involved in mitochondrial protein sorting; functions as an extraction engine in local organelle surveillance to remove and initiate degradation of mistargeted proteins, ensuring fidelity of organelle-specific localization of tail-anchored proteins; contains an N-terminal transmembrane domain and C-terminal cytoplasmic ATPase domain
Top 10 interactors (score): PEX14 (0.918); PEX11 (0.917); PEX12 (0.914); PEX13 (0.914); PXA2 (0.912); PXA1 (0.91); SYM1 (0.906); FIS1 (0.906); HFD1 (0.9); GET3 (0.833); PEX3 (0.712); YBL039W-B (0.707); PEX15 (0.695); PEX19 (0.692); NDC1 (0.691); MGR1 (0.674); SEN1 (0.66); BNA3 (0.657); SRB8 (0.656); CDC33 (0.653)
Homologues (species, bitscore): ATAD1 (Homo sapiens, 293.9); Atad1 (Mus musculus, 293.9); atad1a (Danio rerio, 292.0); atad1 (Xenopus tropicalis, 284.6); nmd (Drosophila melanogaster, 272.3); mspn-1 (Caenorhabditis elegans, 254.2); AT4G27680 (Arabidopsis thaliana, 260.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:537811-538899:+ | gene-YGR028W_AKU4011 | rna-NM_001181157.3_AKU4011 | cds-NP_011542.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:36939-38027:- | gene-YGR028W_BG1 | rna-NM_001181157.3_BG1 | cds-NP_011542.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:540075-541163:+ | gene-YGR028W_Bruggeman | rna-NM_001181157.3_Bruggeman | cds-NP_011542.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:538140-539228:+ | gene-YGR028W_CAT1 | rna-NM_001181157.3_CAT1 | cds-NP_011542.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:539141-540229:+ | gene-YGR028W_CBS1585 | rna-NM_001181157.3_CBS1585 | cds-NP_011542.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:533914-535002:+ | gene-YGR028W_CBS436 | rna-NM_001181157.3_CBS436 | cds-NP_011542.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:531899-532987:+ | gene-YGR028W_CBS6412 | rna-NM_001181157.3_CBS6412 | cds-NP_011542.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:535985-537073:+ | gene-YGR028W_CBS6413 | rna-NM_001181157.3_CBS6413 | cds-NP_011542.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:542044-543132:+ | gene-YGR028W_CENPK1137D | rna-NM_001181157.3_CENPK1137D | cds-NP_011542.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:526025-527113:+ | gene-YGR028W_EthanolRed | rna-NM_001181157.3_EthanolRed | cds-NP_011542.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:529513-530601:+ | gene-YGR028W_FaliES1 | rna-NM_001181157.3_FaliES1 | cds-NP_011542.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000020.1:68201-69289:+ | gene-YGR028W_JAY291 | rna-NM_001181157.3_JAY291 | cds-NP_011542.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:536709-537797:+ | gene-YGR028W_MUCL30387 | rna-NM_001181157.3_MUCL30387 | cds-NP_011542.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:539328-540416:+ | gene-YGR028W_MUCL30388 | rna-NM_001181157.3_MUCL30388 | cds-NP_011542.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:534963-536051:+ | gene-YGR028W_MUCL39482 | rna-NM_001181157.3_MUCL39482 | cds-NP_011542.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:544743-545831:+ | gene-YGR028W_MUCL42920 | rna-NM_001181157.3_MUCL42920 | cds-NP_011542.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:542203-543291:+ | gene-YGR028W_NCIM3186 | rna-NM_001181157.3_NCIM3186 | cds-NP_011542.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:529146-530234:+ | gene-YGR028W_NCYC1407 | rna-NM_001181157.3_NCYC1407 | cds-NP_011542.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:532023-533111:+ | gene-YGR028W_PE2H3 | rna-NM_001181157.3_PE2H3 | cds-NP_011542.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:537130-538218:+ | gene-YGR028W_PE2H4 | rna-NM_001181157.3_PE2H4 | cds-NP_011542.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:542203-543291:+ | gene-YGR028W_S288C | rna-NM_001181157.3_S288C | cds-NP_011542.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:18623-19711:- | gene-YGR028W_SA1 | rna-NM_001181157.3_SA1 | cds-NP_011542.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:548850-549938:+ | gene-YGR028W_ThermosaccDry | rna-NM_001181157.3_ThermosaccDry | cds-NP_011542.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:639293-640381:+ | gene-YGR028W_VR1 | rna-NM_001181157.3_VR1 | cds-NP_011542.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:4331-5419:+ | gene-YGR028W_ZTW1 | rna-NM_001181157.3_ZTW1 | cds-NP_011542.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:537400-538488:+ | gene-YGR028W_Sparadoxus | rna-NM_001181157.3_Sparadoxus | cds-NP_011542.3_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |