Gene name: MSN5
Reference locus (S288C): YDR335W
Gene biotype: protein_coding
Description: Protein MSN5; Karyopherin; involved in nuclear import and export of proteins, including import of replication protein A and export of Far1p and transcription factors Swi5p, Swi6p, Msn2p, and Pho4p; required for re-export of mature tRNAs after their retrograde import from the cytoplasm; exportin-5 homolog
Top 10 interactors (score): GSP1 (0.999); LOS1 (0.994); GSP2 (0.991); CRM1 (0.984); NUP2 (0.974); PSE1 (0.967); PHO4 (0.966); STU2 (0.966); MTR10 (0.959); KAP95 (0.958); NUP159 (0.953); RNA1 (0.95); SRP1 (0.94); CSE1 (0.935); KAP123 (0.933); NMD5 (0.925); RNT1 (0.921); KAP114 (0.917); NSP1 (0.912); NUP100 (0.909)
Homologues (species, bitscore): XPO5 (Homo sapiens, 90.5); Xpo5 (Mus musculus, 89.0); XPO5 (Danio rerio, 77.8); xpo5 (Xenopus tropicalis, 103.6); Ranbp21 (Drosophila melanogaster, 67.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1087204-1090878:+ | gene-YDR335W_AKU4011 | rna-NM_001180643.1_AKU4011 | cds-NP_010622.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:40682-44356:- | gene-YDR335W_BG1 | rna-NM_001180643.1_BG1 | cds-NP_010622.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1114752-1118426:+ | gene-YDR335W_Bruggeman | rna-NM_001180643.1_Bruggeman | cds-NP_010622.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1101494-1105168:+ | gene-YDR335W_CAT1 | rna-NM_001180643.1_CAT1 | cds-NP_010622.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1081648-1085322:+ | gene-YDR335W_CBS1585 | rna-NM_001180643.1_CBS1585 | cds-NP_010622.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1100035-1103709:+ | gene-YDR335W_CBS436 | rna-NM_001180643.1_CBS436 | cds-NP_010622.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1078336-1082010:+ | gene-YDR335W_CBS6412 | rna-NM_001180643.1_CBS6412 | cds-NP_010622.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1099567-1103241:+ | gene-YDR335W_CBS6413 | rna-NM_001180643.1_CBS6413 | cds-NP_010622.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1139819-1143493:+ | gene-YDR335W_CENPK1137D | rna-NM_001180643.1_CENPK1137D | cds-NP_010622.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:262744-266418:+ | gene-YDR335W_EthanolRed | rna-NM_001180643.1_EthanolRed | cds-NP_010622.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1093959-1097633:+ | gene-YDR335W_FaliES1 | rna-NM_001180643.1_FaliES1 | cds-NP_010622.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000386.1:46472-50146:+ | gene-YDR335W_JAY291 | rna-NM_001180643.1_JAY291 | cds-NP_010622.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1099996-1103670:+ | gene-YDR335W_MUCL30387 | rna-NM_001180643.1_MUCL30387 | cds-NP_010622.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1088953-1092627:+ | gene-YDR335W_MUCL30388 | rna-NM_001180643.1_MUCL30388 | cds-NP_010622.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1073455-1077129:+ | gene-YDR335W_MUCL39482 | rna-NM_001180643.1_MUCL39482 | cds-NP_010622.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1020529-1024203:+ | gene-YDR335W_MUCL42920 | rna-NM_001180643.1_MUCL42920 | cds-NP_010622.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1141091-1144765:+ | gene-YDR335W_NCIM3186 | rna-NM_001180643.1_NCIM3186 | cds-NP_010622.1_NCIM3186 | 98.0 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1086746-1090420:+ | gene-YDR335W_NCYC1407 | rna-NM_001180643.1_NCYC1407 | cds-NP_010622.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1097752-1101426:+ | gene-YDR335W_PE2H3 | rna-NM_001180643.1_PE2H3 | cds-NP_010622.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1103337-1107011:+ | gene-YDR335W_PE2H4 | rna-NM_001180643.1_PE2H4 | cds-NP_010622.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1141168-1144842:+ | gene-YDR335W_S288C | rna-NM_001180643.1_S288C | cds-NP_010622.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:111974-115648:+ | gene-YDR335W_SA1 | rna-NM_001180643.1_SA1 | cds-NP_010622.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1098232-1101906:+ | gene-YDR335W_ThermosaccDry | rna-NM_001180643.1_ThermosaccDry | cds-NP_010622.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1114144-1117818:+ | gene-YDR335W_VR1 | rna-NM_001180643.1_VR1 | cds-NP_010622.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:142343-146017:+ | gene-YDR335W_ZTW1 | rna-NM_001180643.1_ZTW1 | cds-NP_010622.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1093645-1097319:+ | gene-YDR335W_Sparadoxus | rna-NM_001180643.1_Sparadoxus | cds-NP_010622.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |