Gene name: MSN4
Reference locus (S288C): YKL062W
Gene biotype: protein_coding
Description: Zinc finger protein MSN4; Stress-responsive transcriptional activator; activated in stochastic pulses of nuclear localization in response to various stress conditions; binds DNA at stress response elements of responsive genes, inducing gene expression; involved in diauxic shift
Top 10 interactors (score): MSN2 (0.989); RIM15 (0.988); TPK2 (0.984); HOG1 (0.984); TPK1 (0.982); TPK3 (0.982); SCH9 (0.953); HSF1 (0.926); MCM1 (0.916); RAS2 (0.906); YAP1 (0.895); GIS1 (0.871); TOR1 (0.851); YAK1 (0.844); SNF1 (0.844); GCN4 (0.842); SWI6 (0.838); SKN7 (0.837); SFP1 (0.827); BCY1 (0.825)
Homologues (species, bitscore): EGR3 (Homo sapiens, 73.9); Egr3 (Mus musculus, 73.9); egr2a (Danio rerio, 75.1); EGR3 (Xenopus tropicalis, 73.9); sr (Drosophila melanogaster, 74.3); egrh-1 (Caenorhabditis elegans, 70.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:309204-311096:+ | gene-YKL062W_AKU4011 | rna-NM_001179628.1_AKU4011 | cds-NP_012861.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:332856-334748:- | gene-YKL062W_BG1 | rna-NM_001179628.1_BG1 | cds-NP_012861.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:328242-330134:+ | gene-YKL062W_Bruggeman | rna-NM_001179628.1_Bruggeman | cds-NP_012861.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:324678-326570:+ | gene-YKL062W_CAT1 | rna-NM_001179628.1_CAT1 | cds-NP_012861.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:321934-323826:+ | gene-YKL062W_CBS1585 | rna-NM_001179628.1_CBS1585 | cds-NP_012861.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:320087-321979:+ | gene-YKL062W_CBS436 | rna-NM_001179628.1_CBS436 | cds-NP_012861.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:306075-307967:+ | gene-YKL062W_CBS6412 | rna-NM_001179628.1_CBS6412 | cds-NP_012861.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:321900-323792:+ | gene-YKL062W_CBS6413 | rna-NM_001179628.1_CBS6413 | cds-NP_012861.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:322889-324781:+ | gene-YKL062W_CENPK1137D | rna-NM_001179628.1_CENPK1137D | cds-NP_012861.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:319908-321800:+ | gene-YKL062W_EthanolRed | rna-NM_001179628.1_EthanolRed | cds-NP_012861.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:320721-322613:+ | gene-YKL062W_FaliES1 | rna-NM_001179628.1_FaliES1 | cds-NP_012861.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000080.1:25649-27541:+ | gene-YKL062W_JAY291 | rna-NM_001179628.1_JAY291 | cds-NP_012861.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:329153-331045:+ | gene-YKL062W_MUCL30387 | rna-NM_001179628.1_MUCL30387 | cds-NP_012861.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:324052-325944:+ | gene-YKL062W_MUCL30388 | rna-NM_001179628.1_MUCL30388 | cds-NP_012861.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:321230-323122:+ | gene-YKL062W_MUCL39482 | rna-NM_001179628.1_MUCL39482 | cds-NP_012861.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:326139-328031:+ | gene-YKL062W_MUCL42920 | rna-NM_001179628.1_MUCL42920 | cds-NP_012861.1_MUCL42920 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:323217-325109:+ | gene-YKL062W_NCIM3186 | rna-NM_001179628.1_NCIM3186 | cds-NP_012861.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:321427-323319:+ | gene-YKL062W_NCYC1407 | rna-NM_001179628.1_NCYC1407 | cds-NP_012861.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:345990-347882:+ | gene-YKL062W_PE2H3 | rna-NM_001179628.1_PE2H3 | cds-NP_012861.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:330731-332623:+ | gene-YKL062W_PE2H4 | rna-NM_001179628.1_PE2H4 | cds-NP_012861.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:323228-325120:+ | gene-YKL062W_S288C | rna-NM_001179628.1_S288C | cds-NP_012861.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:1229-3121:+ | gene-YKL062W_SA1 | rna-NM_001179628.1_SA1 | cds-NP_012861.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:321911-323803:+ | gene-YKL062W_ThermosaccDry | rna-NM_001179628.1_ThermosaccDry | cds-NP_012861.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:321056-322948:+ | gene-YKL062W_VR1 | rna-NM_001179628.1_VR1 | cds-NP_012861.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:319956-321848:+ | gene-YKL062W_ZTW1 | rna-NM_001179628.1_ZTW1 | cds-NP_012861.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:339082-340977:+ | gene-YKL062W_Sparadoxus | rna-NM_001179628.1_Sparadoxus | cds-NP_012861.1_Sparadoxus | 90.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |