Gene name: MSN1
Reference locus (S288C): YOL116W
Gene biotype: protein_coding
Description: Protein MSN1; Transcriptional activator; involved in regulation of invertase and glucoamylase expression, invasive growth and pseudohyphal differentiation, iron uptake, chromium accumulation, and response to osmotic stress; localizes to the nucleus; relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): MSS11 (0.962); FLO8 (0.87); HOG1 (0.785); YMR181C (0.777); SKO1 (0.765); PHD1 (0.749); FLO11 (0.748); STE12 (0.713); TEC1 (0.697); SMP1 (0.691); MSN2 (0.679); GTS1 (0.618); MTC7 (0.613); NCE102 (0.611); MEP2 (0.611); BOI1 (0.597); SFL1 (0.574); SKN7 (0.567); YAP6 (0.563); CIN5 (0.559)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:88454-89602:+ | gene-YOL116W_AKU4011 | rna-NM_001183370.1_AKU4011 | cds-NP_014525.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:54083-55231:+ | gene-YOL116W_BG1 | rna-NM_001183370.1_BG1 | cds-NP_014525.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:89728-90876:+ | gene-YOL116W_Bruggeman | rna-NM_001183370.1_Bruggeman | cds-NP_014525.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:88918-90066:+ | gene-YOL116W_CAT1 | rna-NM_001183370.1_CAT1 | cds-NP_014525.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:82930-84078:+ | gene-YOL116W_CBS1585 | rna-NM_001183370.1_CBS1585 | cds-NP_014525.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:88765-89913:+ | gene-YOL116W_CBS436 | rna-NM_001183370.1_CBS436 | cds-NP_014525.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:82793-83941:+ | gene-YOL116W_CBS6412 | rna-NM_001183370.1_CBS6412 | cds-NP_014525.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:89261-90409:+ | gene-YOL116W_CBS6413 | rna-NM_001183370.1_CBS6413 | cds-NP_014525.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:99704-100852:+ | gene-YOL116W_CENPK1137D | rna-NM_001183370.1_CENPK1137D | cds-NP_014525.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:86727-87875:+ | gene-YOL116W_EthanolRed | rna-NM_001183370.1_EthanolRed | cds-NP_014525.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:88756-89904:+ | gene-YOL116W_FaliES1 | rna-NM_001183370.1_FaliES1 | cds-NP_014525.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000203.1:5964-7112:+ | gene-YOL116W_JAY291 | rna-NM_001183370.1_JAY291 | cds-NP_014525.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:94370-95518:+ | gene-YOL116W_MUCL30387 | rna-NM_001183370.1_MUCL30387 | cds-NP_014525.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:97369-98517:+ | gene-YOL116W_MUCL30388 | rna-NM_001183370.1_MUCL30388 | cds-NP_014525.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:90868-92016:+ | gene-YOL116W_MUCL39482 | rna-NM_001183370.1_MUCL39482 | cds-NP_014525.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:106999-108147:+ | gene-YOL116W_MUCL42920 | rna-NM_001183370.1_MUCL42920 | cds-NP_014525.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:99698-100846:+ | gene-YOL116W_NCIM3186 | rna-NM_001183370.1_NCIM3186 | cds-NP_014525.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:96902-98050:+ | gene-YOL116W_NCYC1407 | rna-NM_001183370.1_NCYC1407 | cds-NP_014525.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:75364-76512:+ | gene-YOL116W_PE2H3 | rna-NM_001183370.1_PE2H3 | cds-NP_014525.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:92292-93440:+ | gene-YOL116W_PE2H4 | rna-NM_001183370.1_PE2H4 | cds-NP_014525.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:99809-100957:+ | gene-YOL116W_S288C | rna-NM_001183370.1_S288C | cds-NP_014525.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:73236-74384:+ | gene-YOL116W_SA1 | rna-NM_001183370.1_SA1 | cds-NP_014525.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:87894-89042:+ | gene-YOL116W_ThermosaccDry | rna-NM_001183370.1_ThermosaccDry | cds-NP_014525.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:88541-89689:+ | gene-YOL116W_VR1 | rna-NM_001183370.1_VR1 | cds-NP_014525.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:87619-88767:+ | gene-YOL116W_ZTW1 | rna-NM_001183370.1_ZTW1 | cds-NP_014525.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:90395-91540:+ | gene-YOL116W_Sparadoxus | rna-NM_001183370.1_Sparadoxus | cds-NP_014525.1_Sparadoxus | 90.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |