Gene name: MSM1
Reference locus (S288C): YGR171C
Gene biotype: protein_coding
Description: Methionine--tRNA ligase, mitochondrial; Mitochondrial methionyl-tRNA synthetase (MetRS); functions as a monomer in mitochondrial protein synthesis; functions similarly to cytoplasmic MetRS although the cytoplasmic form contains a zinc-binding domain not found in Msm1p
Top 10 interactors (score): ARC1 (0.993); MSE1 (0.978); GLN4 (0.972); CDC60 (0.958); GUS1 (0.949); TYS1 (0.948); MSR1 (0.941); FMT1 (0.939); YDR341C (0.936); KRS1 (0.933); MSY1 (0.921); NAM2 (0.92); MET6 (0.911); ILS1 (0.909); MSD1 (0.907); CYS3 (0.904); MES1 (0.881); YHR020W (0.88); THS1 (0.846); MSF1 (0.838)
Homologues (species, bitscore): MARS2 (Homo sapiens, 324.3); Mars2 (Mus musculus, 313.9); MARS2 (Danio rerio, 347.1); mars2 (Xenopus tropicalis, 327.8); Aats-met (Drosophila melanogaster, 294.3); Y105E8A.20 (Caenorhabditis elegans, 340.5); OVA1 (Arabidopsis thaliana, 253.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:808584-810311:- | gene-YGR171C_AKU4011 | rna-NM_001181300.1_AKU4011 | cds-NP_011687.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:86703-88430:- | gene-YGR171C_BG1 | rna-NM_001181300.1_BG1 | cds-NP_011687.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:814513-816240:- | gene-YGR171C_Bruggeman | rna-NM_001181300.1_Bruggeman | cds-NP_011687.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:810365-812092:- | gene-YGR171C_CAT1 | rna-NM_001181300.1_CAT1 | cds-NP_011687.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:809299-811026:- | gene-YGR171C_CBS1585 | rna-NM_001181300.1_CBS1585 | cds-NP_011687.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:813186-814913:- | gene-YGR171C_CBS436 | rna-NM_001181300.1_CBS436 | cds-NP_011687.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:800669-802396:- | gene-YGR171C_CBS6412 | rna-NM_001181300.1_CBS6412 | cds-NP_011687.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:806164-807891:- | gene-YGR171C_CBS6413 | rna-NM_001181300.1_CBS6413 | cds-NP_011687.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:840553-842280:- | gene-YGR171C_CENPK1137D | rna-NM_001181300.1_CENPK1137D | cds-NP_011687.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:795174-796901:- | gene-YGR171C_EthanolRed | rna-NM_001181300.1_EthanolRed | cds-NP_011687.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:799565-801292:- | gene-YGR171C_FaliES1 | rna-NM_001181300.1_FaliES1 | cds-NP_011687.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000112.1:41478-43205:- | gene-YGR171C_JAY291 | rna-NM_001181300.1_JAY291 | cds-NP_011687.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:812003-813730:- | gene-YGR171C_MUCL30387 | rna-NM_001181300.1_MUCL30387 | cds-NP_011687.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:811702-813429:- | gene-YGR171C_MUCL30388 | rna-NM_001181300.1_MUCL30388 | cds-NP_011687.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:804874-806601:- | gene-YGR171C_MUCL39482 | rna-NM_001181300.1_MUCL39482 | cds-NP_011687.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:819826-821553:- | gene-YGR171C_MUCL42920 | rna-NM_001181300.1_MUCL42920 | cds-NP_011687.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:840824-842551:- | gene-YGR171C_NCIM3186 | rna-NM_001181300.1_NCIM3186 | cds-NP_011687.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:799983-801710:- | gene-YGR171C_NCYC1407 | rna-NM_001181300.1_NCYC1407 | cds-NP_011687.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:819172-820899:- | gene-YGR171C_PE2H3 | rna-NM_001181300.1_PE2H3 | cds-NP_011687.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:824282-826009:- | gene-YGR171C_PE2H4 | rna-NM_001181300.1_PE2H4 | cds-NP_011687.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:840824-842551:- | gene-YGR171C_S288C | rna-NM_001181300.1_S288C | cds-NP_011687.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000035.1:64482-66209:- | gene-YGR171C_SA1 | rna-NM_001181300.1_SA1 | cds-NP_011687.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:820076-821803:- | gene-YGR171C_ThermosaccDry | rna-NM_001181300.1_ThermosaccDry | cds-NP_011687.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:924322-926049:- | gene-YGR171C_VR1 | rna-NM_001181300.1_VR1 | cds-NP_011687.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:121515-123242:- | gene-YGR171C_ZTW1 | rna-NM_001181300.1_ZTW1 | cds-NP_011687.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:811001-812728:- | gene-YGR171C_Sparadoxus | rna-NM_001181300.1_Sparadoxus | cds-NP_011687.1_Sparadoxus | 88.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |