Gene name: MSL1
Reference locus (S288C): YIR009W
Gene biotype: protein_coding
Description: U2 small nuclear ribonucleoprotein B'; U2B component of U2 snRNP; involved in splicing, binds the U2 snRNA stem-loop IV in vitro but requires association of Lea1p for in vivo binding; does not contain the conserved C-terminal RNA binding domain found in other family members
Top 10 interactors (score): PRP19 (0.999); YHC1 (0.999); LEA1 (0.999); HSH155 (0.999); HSH49 (0.999); SMD3 (0.999); SMB1 (0.999); PRP6 (0.999); CEF1 (0.999); SMD2 (0.999); PRP9 (0.999); SMD1 (0.999); SNP1 (0.999); BUD31 (0.999); RDS3 (0.999); PRP21 (0.999); SME1 (0.999); YSF3 (0.999); PRP22 (0.999); PRP11 (0.999)
Homologues (species, bitscore): SNRPA (Homo sapiens, 67.0); Snrpa (Mus musculus, 69.3); snrpa (Danio rerio, 63.5); snrpb2 (Xenopus tropicalis, 58.9); snf (Drosophila melanogaster, 65.5); rnp-2 (Caenorhabditis elegans, 67.0); U2B' (Arabidopsis thaliana, 57.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:373870-374205:+ | gene-YIR009W_AKU4011 | rna-NM_001179531.1_AKU4011 | cds-NP_012274.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000072.1:52360-52695:- | gene-YIR009W_BG1 | rna-NM_001179531.1_BG1 | cds-NP_012274.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:378286-378621:+ | gene-YIR009W_Bruggeman | rna-NM_001179531.1_Bruggeman | cds-NP_012274.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:365011-365346:+ | gene-YIR009W_CAT1 | rna-NM_001179531.1_CAT1 | cds-NP_012274.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:373905-374240:+ | gene-YIR009W_CBS1585 | rna-NM_001179531.1_CBS1585 | cds-NP_012274.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:366566-366901:+ | gene-YIR009W_CBS436 | rna-NM_001179531.1_CBS436 | cds-NP_012274.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:369388-369723:+ | gene-YIR009W_CBS6412 | rna-NM_001179531.1_CBS6412 | cds-NP_012274.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:365985-366320:+ | gene-YIR009W_CBS6413 | rna-NM_001179531.1_CBS6413 | cds-NP_012274.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:366584-366919:+ | gene-YIR009W_CENPK1137D | rna-NM_001179531.1_CENPK1137D | cds-NP_012274.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:356954-357289:+ | gene-YIR009W_EthanolRed | rna-NM_001179531.1_EthanolRed | cds-NP_012274.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:375681-376016:+ | gene-YIR009W_FaliES1 | rna-NM_001179531.1_FaliES1 | cds-NP_012274.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000009.1:15946-16281:- | gene-YIR009W_JAY291 | rna-NM_001179531.1_JAY291 | cds-NP_012274.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:375542-375877:+ | gene-YIR009W_MUCL30387 | rna-NM_001179531.1_MUCL30387 | cds-NP_012274.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:372311-372646:+ | gene-YIR009W_MUCL30388 | rna-NM_001179531.1_MUCL30388 | cds-NP_012274.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:374540-374875:+ | gene-YIR009W_MUCL39482 | rna-NM_001179531.1_MUCL39482 | cds-NP_012274.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:378109-378444:+ | gene-YIR009W_MUCL42920 | rna-NM_001179531.1_MUCL42920 | cds-NP_012274.1_MUCL42920 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:374525-374860:+ | gene-YIR009W_NCIM3186 | rna-NM_001179531.1_NCIM3186 | cds-NP_012274.1_NCIM3186 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:378767-379102:+ | gene-YIR009W_NCYC1407 | rna-NM_001179531.1_NCYC1407 | cds-NP_012274.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:368591-368926:+ | gene-YIR009W_PE2H3 | rna-NM_001179531.1_PE2H3 | cds-NP_012274.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:363297-363632:+ | gene-YIR009W_PE2H4 | rna-NM_001179531.1_PE2H4 | cds-NP_012274.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:374525-374860:+ | gene-YIR009W_S288C | rna-NM_001179531.1_S288C | cds-NP_012274.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000066.1:49374-49709:+ | gene-YIR009W_SA1 | rna-NM_001179531.1_SA1 | cds-NP_012274.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:373285-373620:+ | gene-YIR009W_ThermosaccDry | rna-NM_001179531.1_ThermosaccDry | cds-NP_012274.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:369364-369699:+ | gene-YIR009W_VR1 | rna-NM_001179531.1_VR1 | cds-NP_012274.1_VR1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:347284-347619:+ | gene-YIR009W_ZTW1 | rna-NM_001179531.1_ZTW1 | cds-NP_012274.1_ZTW1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:368716-369051:+ | gene-YIR009W_Sparadoxus | rna-NM_001179531.1_Sparadoxus | cds-NP_012274.1_Sparadoxus | 92.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |