Gene name: MSK1
Reference locus (S288C): YNL073W
Gene biotype: protein_coding
Description: Lysine--tRNA ligase, mitochondrial; Mitochondrial lysine-tRNA synthetase; required for import of both aminoacylated and deacylated forms of tRNA(Lys) into mitochondria and for aminoacylation of mitochondrially encoded tRNA(Lys)
Top 10 interactors (score): GUS1 (0.99); GLN4 (0.988); HTS1 (0.985); YHR020W (0.979); CDC60 (0.974); MES1 (0.967); ILS1 (0.961); WRS1 (0.961); TYS1 (0.959); MSW1 (0.956); MSY1 (0.942); MSF1 (0.942); NAM2 (0.937); AIM10 (0.935); ALA1 (0.933); GRS1 (0.922); ARC1 (0.917); CCT5 (0.9); FRS1 (0.889); TEF4 (0.882)
Homologues (species, bitscore): KARS (Homo sapiens, 229.9); Kars (Mus musculus, 233.8); kars (Danio rerio, 229.6); kars (Xenopus tropicalis, 229.9); Aats-lys (Drosophila melanogaster, 245.4); kars-1 (Caenorhabditis elegans, 243.4); ATKRS-1 (Arabidopsis thaliana, 235.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:482054-483784:+ | gene-YNL073W_AKU4011 | rna-NM_001182911.1_AKU4011 | cds-NP_014326.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:386075-387805:+ | gene-YNL073W_BG1 | rna-NM_001182911.1_BG1 | cds-NP_014326.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:492782-494512:+ | gene-YNL073W_Bruggeman | rna-NM_001182911.1_Bruggeman | cds-NP_014326.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:535782-537512:+ | gene-YNL073W_CAT1 | rna-NM_001182911.1_CAT1 | cds-NP_014326.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:482722-484452:+ | gene-YNL073W_CBS1585 | rna-NM_001182911.1_CBS1585 | cds-NP_014326.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:551139-552869:+ | gene-YNL073W_CBS436 | rna-NM_001182911.1_CBS436 | cds-NP_014326.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:477816-479546:+ | gene-YNL073W_CBS6412 | rna-NM_001182911.1_CBS6412 | cds-NP_014326.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:479132-480862:+ | gene-YNL073W_CBS6413 | rna-NM_001182911.1_CBS6413 | cds-NP_014326.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:482210-483940:+ | gene-YNL073W_CENPK1137D | rna-NM_001182911.1_CENPK1137D | cds-NP_014326.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:484875-486605:+ | gene-YNL073W_EthanolRed | rna-NM_001182911.1_EthanolRed | cds-NP_014326.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:475400-477130:+ | gene-YNL073W_FaliES1 | rna-NM_001182911.1_FaliES1 | cds-NP_014326.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000001.1:1837-3567:+ | gene-YNL073W_JAY291 | rna-NM_001182911.1_JAY291 | cds-NP_014326.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:488945-490675:+ | gene-YNL073W_MUCL30387 | rna-NM_001182911.1_MUCL30387 | cds-NP_014326.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:524344-526074:+ | gene-YNL073W_MUCL30388 | rna-NM_001182911.1_MUCL30388 | cds-NP_014326.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:480125-481855:+ | gene-YNL073W_MUCL39482 | rna-NM_001182911.1_MUCL39482 | cds-NP_014326.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:484054-485784:+ | gene-YNL073W_MUCL42920 | rna-NM_001182911.1_MUCL42920 | cds-NP_014326.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:488355-490085:+ | gene-YNL073W_NCIM3186 | rna-NM_001182911.1_NCIM3186 | cds-NP_014326.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:482176-483906:+ | gene-YNL073W_NCYC1407 | rna-NM_001182911.1_NCYC1407 | cds-NP_014326.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:485414-487144:+ | gene-YNL073W_PE2H3 | rna-NM_001182911.1_PE2H3 | cds-NP_014326.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:480489-482219:+ | gene-YNL073W_PE2H4 | rna-NM_001182911.1_PE2H4 | cds-NP_014326.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:488386-490116:+ | gene-YNL073W_S288C | rna-NM_001182911.1_S288C | cds-NP_014326.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:73341-75071:+ | gene-YNL073W_SA1 | rna-NM_001182911.1_SA1 | cds-NP_014326.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:476275-478005:+ | gene-YNL073W_ThermosaccDry | rna-NM_001182911.1_ThermosaccDry | cds-NP_014326.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:495393-497123:+ | gene-YNL073W_VR1 | rna-NM_001182911.1_VR1 | cds-NP_014326.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:385626-387356:+ | gene-YNL073W_ZTW1 | rna-NM_001182911.1_ZTW1 | cds-NP_014326.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:491836-493563:+ | gene-YNL073W_Sparadoxus | rna-NM_001182911.1_Sparadoxus | cds-NP_014326.1_Sparadoxus | 86.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |