Gene name: MSH3
Reference locus (S288C): YCR092C
Gene biotype: protein_coding
Description: Mismatch repair protein; forms dimers with Msh2p that mediate repair of insertion or deletion mutations and removal of nonhomologous DNA ends, contains a PCNA (Pol30p) binding motif required for genome stability; Belongs to the DNA mismatch repair MutS family. MSH3 subfamily
Top 10 interactors (score): MLH1 (0.999); PMS1 (0.999); MSH2 (0.999); MLH3 (0.997); MSH6 (0.994); RAD10 (0.989); EXO1 (0.985); RAD1 (0.981); POL30 (0.981); RAD14 (0.965); RAD27 (0.965); RAD52 (0.962); SLX1 (0.959); RAD2 (0.955); POL2 (0.953); OGG1 (0.949); MUS81 (0.948); POL3 (0.947); MLH2 (0.936); RAD51 (0.921)
Homologues (species, bitscore): MSH3 (Homo sapiens, 453.8); Msh3 (Mus musculus, 448.7); msh3 (Danio rerio, 415.2); msh3 (Xenopus tropicalis, 441.4); Msh6 (Drosophila melanogaster, 214.9); msh-6 (Caenorhabditis elegans, 235.7); MSH3 (Arabidopsis thaliana, 388.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:271704-274760:- | gene-YCR092C_AKU4011 | rna-NM_001178798.1_AKU4011 | cds-NP_010016.2_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:130006-133062:- | gene-YCR092C_BG1 | rna-NM_001178798.1_BG1 | cds-NP_010016.2_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:268516-271572:- | gene-YCR092C_Bruggeman | rna-NM_001178798.1_Bruggeman | cds-NP_010016.2_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:278511-281567:- | gene-YCR092C_CAT1 | rna-NM_001178798.1_CAT1 | cds-NP_010016.2_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:266451-269507:- | gene-YCR092C_CBS1585 | rna-NM_001178798.1_CBS1585 | cds-NP_010016.2_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:277843-280899:- | gene-YCR092C_CBS436 | rna-NM_001178798.1_CBS436 | cds-NP_010016.2_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:257598-260654:- | gene-YCR092C_CBS6412 | rna-NM_001178798.1_CBS6412 | cds-NP_010016.2_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:272150-275206:- | gene-YCR092C_CBS6413 | rna-NM_001178798.1_CBS6413 | cds-NP_010016.2_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:275992-279048:- | gene-YCR092C_CENPK1137D | rna-NM_001178798.1_CENPK1137D | cds-NP_010016.2_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:267349-270405:- | gene-YCR092C_EthanolRed | rna-NM_001178798.1_EthanolRed | cds-NP_010016.2_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:273449-276505:- | gene-YCR092C_FaliES1 | rna-NM_001178798.1_FaliES1 | cds-NP_010016.2_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000323.1:13306-16362:+ | gene-YCR092C_JAY291 | rna-NM_001178798.1_JAY291 | cds-NP_010016.2_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:265317-268373:- | gene-YCR092C_MUCL30387 | rna-NM_001178798.1_MUCL30387 | cds-NP_010016.2_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:264138-267194:- | gene-YCR092C_MUCL30388 | rna-NM_001178798.1_MUCL30388 | cds-NP_010016.2_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:273095-276151:- | gene-YCR092C_MUCL39482 | rna-NM_001178798.1_MUCL39482 | cds-NP_010016.2_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:269306-272362:- | gene-YCR092C_MUCL42920 | rna-NM_001178798.1_MUCL42920 | cds-NP_010016.2_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:276396-279452:- | gene-YCR092C_NCIM3186 | rna-NM_001178798.1_NCIM3186 | cds-NP_010016.2_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:273738-276794:- | gene-YCR092C_NCYC1407 | rna-NM_001178798.1_NCYC1407 | cds-NP_010016.2_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:288024-291080:- | gene-YCR092C_PE2H3 | rna-NM_001178798.1_PE2H3 | cds-NP_010016.2_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:276576-279632:- | gene-YCR092C_PE2H4 | rna-NM_001178798.1_PE2H4 | cds-NP_010016.2_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:276764-279820:- | gene-YCR092C_S288C | rna-NM_001178798.1_S288C | cds-NP_010016.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:76752-79808:- | gene-YCR092C_SA1 | rna-NM_001178798.1_SA1 | cds-NP_010016.2_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:273403-276459:- | gene-YCR092C_ThermosaccDry | rna-NM_001178798.1_ThermosaccDry | cds-NP_010016.2_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:283564-286620:- | gene-YCR092C_VR1 | rna-NM_001178798.1_VR1 | cds-NP_010016.2_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:270107-273163:- | gene-YCR092C_ZTW1 | rna-NM_001178798.1_ZTW1 | cds-NP_010016.2_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:304480-307533:- | gene-YCR092C_Sparadoxus | rna-NM_001178798.1_Sparadoxus | cds-NP_010016.2_Sparadoxus | 87.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |