Gene name: MSH1
Reference locus (S288C): YHR120W
Gene biotype: protein_coding
Description: DNA-binding protein of the mitochondria; involved in repair of mitochondrial DNA; has ATPase activity and binds to DNA mismatches; has homology to E. coli MutS; transcription is induced during meiosis
Top 10 interactors (score): MLH3 (0.897); PMS1 (0.892); MLH1 (0.865); MGM101 (0.865); MIP1 (0.826); MLH2 (0.823); CCE1 (0.813); OGG1 (0.795); MHR1 (0.776); MSH2 (0.75); MSH3 (0.74); MSH6 (0.74); APN1 (0.74); YOR338W (0.692); RAD10 (0.675); GEF1 (0.67); RAD2 (0.667); RAD1 (0.659); DIN7 (0.65); RAD14 (0.62)
Homologues (species, bitscore): MSH3 (Homo sapiens, 246.1); Msh3 (Mus musculus, 248.4); msh3 (Danio rerio, 219.5); msh3 (Xenopus tropicalis, 221.5); spel1 (Drosophila melanogaster, 192.6); msh-2 (Caenorhabditis elegans, 180.6); MSH2 (Arabidopsis thaliana, 233.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:336501-339380:+ | gene-YHR120W_AKU4011 | rna-NM_001179250.1_AKU4011 | cds-NP_011988.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:178493-181372:- | gene-YHR120W_BG1 | rna-NM_001179250.1_BG1 | cds-NP_011988.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:343791-346670:+ | gene-YHR120W_Bruggeman | rna-NM_001179250.1_Bruggeman | cds-NP_011988.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:338929-341808:+ | gene-YHR120W_CAT1 | rna-NM_001179250.1_CAT1 | cds-NP_011988.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:335525-338404:+ | gene-YHR120W_CBS1585 | rna-NM_001179250.1_CBS1585 | cds-NP_011988.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:332883-335762:+ | gene-YHR120W_CBS436 | rna-NM_001179250.1_CBS436 | cds-NP_011988.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:336963-339842:+ | gene-YHR120W_CBS6412 | rna-NM_001179250.1_CBS6412 | cds-NP_011988.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:336552-339431:+ | gene-YHR120W_CBS6413 | rna-NM_001179250.1_CBS6413 | cds-NP_011988.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:342748-345627:+ | gene-YHR120W_CENPK1137D | rna-NM_001179250.1_CENPK1137D | cds-NP_011988.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:395406-398285:+ | gene-YHR120W_EthanolRed | rna-NM_001179250.1_EthanolRed | cds-NP_011988.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:336894-339773:+ | gene-YHR120W_FaliES1 | rna-NM_001179250.1_FaliES1 | cds-NP_011988.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000139.1:9510-12389:+ | gene-YHR120W_JAY291 | rna-NM_001179250.1_JAY291 | cds-NP_011988.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:343521-346400:+ | gene-YHR120W_MUCL30387 | rna-NM_001179250.1_MUCL30387 | cds-NP_011988.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:343168-346047:+ | gene-YHR120W_MUCL30388 | rna-NM_001179250.1_MUCL30388 | cds-NP_011988.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:335864-338743:+ | gene-YHR120W_MUCL39482 | rna-NM_001179250.1_MUCL39482 | cds-NP_011988.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:342104-344983:+ | gene-YHR120W_MUCL42920 | rna-NM_001179250.1_MUCL42920 | cds-NP_011988.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:349456-352335:+ | gene-YHR120W_NCIM3186 | rna-NM_001179250.1_NCIM3186 | cds-NP_011988.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:338074-340953:+ | gene-YHR120W_NCYC1407 | rna-NM_001179250.1_NCYC1407 | cds-NP_011988.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:337526-340405:+ | gene-YHR120W_PE2H3 | rna-NM_001179250.1_PE2H3 | cds-NP_011988.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:344953-347832:+ | gene-YHR120W_PE2H4 | rna-NM_001179250.1_PE2H4 | cds-NP_011988.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:349574-352453:+ | gene-YHR120W_S288C | rna-NM_001179250.1_S288C | cds-NP_011988.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:6517-9396:- | gene-YHR120W_SA1 | rna-NM_001179250.1_SA1 | cds-NP_011988.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:337977-340856:+ | gene-YHR120W_ThermosaccDry | rna-NM_001179250.1_ThermosaccDry | cds-NP_011988.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:345598-348477:+ | gene-YHR120W_VR1 | rna-NM_001179250.1_VR1 | cds-NP_011988.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:328988-331867:+ | gene-YHR120W_ZTW1 | rna-NM_001179250.1_ZTW1 | cds-NP_011988.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:334656-337535:+ | gene-YHR120W_Sparadoxus | rna-NM_001179250.1_Sparadoxus | cds-NP_011988.1_Sparadoxus | 89.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |