Gene name: MSF1
Reference locus (S288C): YPR047W
Gene biotype: protein_coding
Description: Phenylalanine--tRNA ligase, mitochondrial; Mitochondrial phenylalanyl-tRNA synthetase; active as a monomer, unlike the cytoplasmic subunit which is active as a dimer complexed to a beta subunit dimer; similar to the alpha subunit of E. coli phenylalanyl-tRNA synthetase
Top 10 interactors (score): FRS1 (0.998); MSW1 (0.981); AIM10 (0.979); MSY1 (0.974); NAM2 (0.966); VAS1 (0.96); KRS1 (0.947); MSK1 (0.942); DIA4 (0.941); WRS1 (0.94); MSE1 (0.915); TYS1 (0.899); FRS2 (0.894); ISM1 (0.889); YHR020W (0.887); HTS1 (0.877); YDR341C (0.868); ALA1 (0.867); SLM5 (0.866); GLN4 (0.848)
Homologues (species, bitscore): FARS2 (Homo sapiens, 309.7); Fars2 (Mus musculus, 317.0); fars2 (Danio rerio, 287.0); FARS2 (Xenopus tropicalis, 121.7); Aats-phe (Drosophila melanogaster, 315.5); fars-2 (Caenorhabditis elegans, 279.6); AT3G58140 (Arabidopsis thaliana, 315.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:629195-630604:+ | gene-YPR047W_AKU4011 | rna-NM_001184144.1_AKU4011 | cds-NP_015372.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:267076-268485:- | gene-YPR047W_BG1 | rna-NM_001184144.1_BG1 | cds-NP_015372.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:706863-708272:+ | gene-YPR047W_Bruggeman | rna-NM_001184144.1_Bruggeman | cds-NP_015372.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:750317-751726:+ | gene-YPR047W_CAT1 | rna-NM_001184144.1_CAT1 | cds-NP_015372.2_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:632881-634290:+ | gene-YPR047W_CBS1585 | rna-NM_001184144.1_CBS1585 | cds-NP_015372.2_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:647259-648668:+ | gene-YPR047W_CBS436 | rna-NM_001184144.1_CBS436 | cds-NP_015372.2_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:636629-638038:+ | gene-YPR047W_CBS6412 | rna-NM_001184144.1_CBS6412 | cds-NP_015372.2_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:629830-631239:+ | gene-YPR047W_CBS6413 | rna-NM_001184144.1_CBS6413 | cds-NP_015372.2_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:657495-658904:+ | gene-YPR047W_CENPK1137D | rna-NM_001184144.1_CENPK1137D | cds-NP_015372.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:956385-957794:+ | gene-YPR047W_EthanolRed | rna-NM_001184144.1_EthanolRed | cds-NP_015372.2_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:635022-636431:+ | gene-YPR047W_FaliES1 | rna-NM_001184144.1_FaliES1 | cds-NP_015372.2_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000446.1:6980-8389:+ | gene-YPR047W_JAY291 | rna-NM_001184144.1_JAY291 | cds-NP_015372.2_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:648124-649533:+ | gene-YPR047W_MUCL30387 | rna-NM_001184144.1_MUCL30387 | cds-NP_015372.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:646828-648237:+ | gene-YPR047W_MUCL30388 | rna-NM_001184144.1_MUCL30388 | cds-NP_015372.2_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:626138-627547:+ | gene-YPR047W_MUCL39482 | rna-NM_001184144.1_MUCL39482 | cds-NP_015372.2_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:688965-690374:+ | gene-YPR047W_MUCL42920 | rna-NM_001184144.1_MUCL42920 | cds-NP_015372.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:657512-658921:+ | gene-YPR047W_NCIM3186 | rna-NM_001184144.1_NCIM3186 | cds-NP_015372.2_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:634068-635477:+ | gene-YPR047W_NCYC1407 | rna-NM_001184144.1_NCYC1407 | cds-NP_015372.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:640283-641692:+ | gene-YPR047W_PE2H3 | rna-NM_001184144.1_PE2H3 | cds-NP_015372.2_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:639931-641340:+ | gene-YPR047W_PE2H4 | rna-NM_001184144.1_PE2H4 | cds-NP_015372.2_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:657529-658938:+ | gene-YPR047W_S288C | rna-NM_001184144.1_S288C | cds-NP_015372.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:41753-43162:- | gene-YPR047W_SA1 | rna-NM_001184144.1_SA1 | cds-NP_015372.2_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:634797-636206:+ | gene-YPR047W_ThermosaccDry | rna-NM_001184144.1_ThermosaccDry | cds-NP_015372.2_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:650956-652365:+ | gene-YPR047W_VR1 | rna-NM_001184144.1_VR1 | cds-NP_015372.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:634029-635438:+ | gene-YPR047W_ZTW1 | rna-NM_001184144.1_ZTW1 | cds-NP_015372.2_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:634802-636211:+ | gene-YPR047W_Sparadoxus | rna-NM_001184144.1_Sparadoxus | cds-NP_015372.2_Sparadoxus | 89.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |