Gene name: MSE1
Reference locus (S288C): YOL033W
Gene biotype: protein_coding
Description: Glutamate--tRNA ligase, mitochondrial; Mitochondrial glutamyl-tRNA synthetase; predicted to be palmitoylated; Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily
Top 10 interactors (score): MSR1 (0.982); MSM1 (0.978); MSY1 (0.975); MSD1 (0.97); IFM1 (0.967); DIA4 (0.963); NAM2 (0.962); AIM10 (0.957); YDR341C (0.953); MES1 (0.942); ARC1 (0.941); ISM1 (0.939); MSF1 (0.915); PET112 (0.914); SLM5 (0.905); CDC60 (0.903); GUS1 (0.903); HER2 (0.896); SES1 (0.896); TYS1 (0.862)
Homologues (species, bitscore): EARS2 (Homo sapiens, 295.0); Ears2 (Mus musculus, 289.3); ENSDARP00000063823 (Danio rerio, 186.0); ears2 (Xenopus tropicalis, 279.3); CG4573 (Drosophila melanogaster, 312.0); ears-2 (Caenorhabditis elegans, 258.5); ERS (Arabidopsis thaliana, 231.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:247837-249447:+ | gene-YOL033W_AKU4011 | rna-NM_001183287.1_AKU4011 | cds-NP_014609.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:63457-65067:+ | gene-YOL033W_BG1 | rna-NM_001183287.1_BG1 | cds-NP_014609.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:250690-252300:+ | gene-YOL033W_Bruggeman | rna-NM_001183287.1_Bruggeman | cds-NP_014609.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:248552-250162:+ | gene-YOL033W_CAT1 | rna-NM_001183287.1_CAT1 | cds-NP_014609.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:242507-244117:+ | gene-YOL033W_CBS1585 | rna-NM_001183287.1_CBS1585 | cds-NP_014609.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:246785-248395:+ | gene-YOL033W_CBS436 | rna-NM_001183287.1_CBS436 | cds-NP_014609.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:241871-243481:+ | gene-YOL033W_CBS6412 | rna-NM_001183287.1_CBS6412 | cds-NP_014609.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:249390-251000:+ | gene-YOL033W_CBS6413 | rna-NM_001183287.1_CBS6413 | cds-NP_014609.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:263175-264785:+ | gene-YOL033W_CENPK1137D | rna-NM_001183287.1_CENPK1137D | cds-NP_014609.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:244824-246434:+ | gene-YOL033W_EthanolRed | rna-NM_001183287.1_EthanolRed | cds-NP_014609.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:247740-249350:+ | gene-YOL033W_FaliES1 | rna-NM_001183287.1_FaliES1 | cds-NP_014609.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:17107-18717:- | gene-YOL033W_JAY291 | rna-NM_001183287.1_JAY291 | cds-NP_014609.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:253712-255322:+ | gene-YOL033W_MUCL30387 | rna-NM_001183287.1_MUCL30387 | cds-NP_014609.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:258064-259674:+ | gene-YOL033W_MUCL30388 | rna-NM_001183287.1_MUCL30388 | cds-NP_014609.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:249992-251602:+ | gene-YOL033W_MUCL39482 | rna-NM_001183287.1_MUCL39482 | cds-NP_014609.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:264924-266534:+ | gene-YOL033W_MUCL42920 | rna-NM_001183287.1_MUCL42920 | cds-NP_014609.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:263364-264974:+ | gene-YOL033W_NCIM3186 | rna-NM_001183287.1_NCIM3186 | cds-NP_014609.1_NCIM3186 | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:256732-258342:+ | gene-YOL033W_NCYC1407 | rna-NM_001183287.1_NCYC1407 | cds-NP_014609.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:239150-240760:+ | gene-YOL033W_PE2H3 | rna-NM_001183287.1_PE2H3 | cds-NP_014609.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:250124-251734:+ | gene-YOL033W_PE2H4 | rna-NM_001183287.1_PE2H4 | cds-NP_014609.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:263475-265085:+ | gene-YOL033W_S288C | rna-NM_001183287.1_S288C | cds-NP_014609.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:231475-233085:+ | gene-YOL033W_SA1 | rna-NM_001183287.1_SA1 | cds-NP_014609.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:246311-247921:+ | gene-YOL033W_ThermosaccDry | rna-NM_001183287.1_ThermosaccDry | cds-NP_014609.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:246375-247985:+ | gene-YOL033W_VR1 | rna-NM_001183287.1_VR1 | cds-NP_014609.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:246175-247785:+ | gene-YOL033W_ZTW1 | rna-NM_001183287.1_ZTW1 | cds-NP_014609.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:254580-256187:+ | gene-YOL033W_Sparadoxus | rna-NM_001183287.1_Sparadoxus | cds-NP_014609.1_Sparadoxus | 89.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |