Gene name: MSD1
Reference locus (S288C): YPL104W
Gene biotype: protein_coding
Description: Aspartate--tRNA ligase, mitochondrial; Mitochondrial aspartyl-tRNA synthetase; required for acylation of aspartyl-tRNA; yeast and bacterial aspartyl-, asparaginyl-, and lysyl-tRNA synthetases contain regions with high sequence similarity, suggesting a common ancestral gene
Top 10 interactors (score): MSR1 (0.975); MSE1 (0.97); MSY1 (0.936); DIA4 (0.928); MSM1 (0.907); DPS1 (0.904); YNL247W (0.89); IFM1 (0.88); VAS1 (0.856); ARG5,6 (0.852); PET112 (0.849); ISM1 (0.845); MSW1 (0.837); NAM2 (0.816); HER2 (0.808); TYS1 (0.797); AIM10 (0.784); MRPS16 (0.777); MSF1 (0.774); MSK1 (0.772)
Homologues (species, bitscore): DARS2 (Homo sapiens, 314.3); Dars2 (Mus musculus, 319.3); dars2 (Danio rerio, 319.7); dars2 (Xenopus tropicalis, 272.7); CG31739 (Drosophila melanogaster, 268.9); dars-2 (Caenorhabditis elegans, 276.6); AT4G33760 (Arabidopsis thaliana, 265.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:333339-335315:+ | gene-YPL104W_AKU4011 | rna-NM_001183918.1_AKU4011 | cds-NP_015221.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:539096-541072:+ | gene-YPL104W_BG1 | rna-NM_001183918.1_BG1 | cds-NP_015221.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:359344-361320:+ | gene-YPL104W_Bruggeman | rna-NM_001183918.1_Bruggeman | cds-NP_015221.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:356012-357988:+ | gene-YPL104W_CAT1 | rna-NM_001183918.1_CAT1 | cds-NP_015221.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:337412-339388:+ | gene-YPL104W_CBS1585 | rna-NM_001183918.1_CBS1585 | cds-NP_015221.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:352087-354063:+ | gene-YPL104W_CBS436 | rna-NM_001183918.1_CBS436 | cds-NP_015221.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:342081-344057:+ | gene-YPL104W_CBS6412 | rna-NM_001183918.1_CBS6412 | cds-NP_015221.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:334048-336024:+ | gene-YPL104W_CBS6413 | rna-NM_001183918.1_CBS6413 | cds-NP_015221.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:355648-357624:+ | gene-YPL104W_CENPK1137D | rna-NM_001183918.1_CENPK1137D | cds-NP_015221.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:332031-334007:+ | gene-YPL104W_EthanolRed | rna-NM_001183918.1_EthanolRed | cds-NP_015221.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:339623-341599:+ | gene-YPL104W_FaliES1 | rna-NM_001183918.1_FaliES1 | cds-NP_015221.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:24217-26193:- | gene-YPL104W_JAY291 | rna-NM_001183918.1_JAY291 | cds-NP_015221.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:350584-352560:+ | gene-YPL104W_MUCL30387 | rna-NM_001183918.1_MUCL30387 | cds-NP_015221.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:349403-351379:+ | gene-YPL104W_MUCL30388 | rna-NM_001183918.1_MUCL30388 | cds-NP_015221.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:330741-332717:+ | gene-YPL104W_MUCL39482 | rna-NM_001183918.1_MUCL39482 | cds-NP_015221.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:388429-390405:+ | gene-YPL104W_MUCL42920 | rna-NM_001183918.1_MUCL42920 | cds-NP_015221.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:355683-357659:+ | gene-YPL104W_NCIM3186 | rna-NM_001183918.1_NCIM3186 | cds-NP_015221.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:337194-339170:+ | gene-YPL104W_NCYC1407 | rna-NM_001183918.1_NCYC1407 | cds-NP_015221.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:344688-346664:+ | gene-YPL104W_PE2H3 | rna-NM_001183918.1_PE2H3 | cds-NP_015221.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:344311-346287:+ | gene-YPL104W_PE2H4 | rna-NM_001183918.1_PE2H4 | cds-NP_015221.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:355700-357676:+ | gene-YPL104W_S288C | rna-NM_001183918.1_S288C | cds-NP_015221.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:16003-17979:- | gene-YPL104W_SA1 | rna-NM_001183918.1_SA1 | cds-NP_015221.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:339421-341397:+ | gene-YPL104W_ThermosaccDry | rna-NM_001183918.1_ThermosaccDry | cds-NP_015221.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:354400-356376:+ | gene-YPL104W_VR1 | rna-NM_001183918.1_VR1 | cds-NP_015221.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:338744-340720:+ | gene-YPL104W_ZTW1 | rna-NM_001183918.1_ZTW1 | cds-NP_015221.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:340423-342399:+ | gene-YPL104W_Sparadoxus | rna-NM_001183918.1_Sparadoxus | cds-NP_015221.1_Sparadoxus | 90.2 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |