Gene name: MSC7
Reference locus (S288C): YHR039C
Gene biotype: protein_coding
Description: Putative aldehyde dehydrogenase-like protein YHR039C; Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; msc7 mutants are defective in directing meiotic recombination events to homologous chromatids
Top 10 interactors (score): GPI18 (0.971); IMG1 (0.968); VMA10 (0.902); PIS1 (0.814); YMR262W (0.784); WBP1 (0.774); TVP38 (0.712); SET5 (0.647); HAT2 (0.621); TFB1 (0.592); VIP1 (0.57); CHC1 (0.561); RRD2 (0.538); SPC98 (0.535); TRA1 (0.53); CAP2 (0.526); PCL7 (0.513); PHO86 (0.506); ALT2 (0.504); BZZ1 (0.502)
Homologues (species, bitscore): ALDH1A1 (Homo sapiens, 199.5); Aldh1a7 (Mus musculus, 198.0); aldh2.2 (Danio rerio, 191.4); aldh2 (Xenopus tropicalis, 189.5); Aldh (Drosophila melanogaster, 182.2); alh-11 (Caenorhabditis elegans, 180.3); ALDH22A1 (Arabidopsis thaliana, 387.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:173136-175070:- | gene-YHR039C_AKU4011 | rna-NM_001179169.1_AKU4011 | cds-NP_011904.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:93351-95285:- | gene-YHR039C_BG1 | rna-NM_001179169.1_BG1 | cds-NP_011904.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:180585-182519:- | gene-YHR039C_Bruggeman | rna-NM_001179169.1_Bruggeman | cds-NP_011904.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:174970-176904:- | gene-YHR039C_CAT1 | rna-NM_001179169.1_CAT1 | cds-NP_011904.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:173508-175442:- | gene-YHR039C_CBS1585 | rna-NM_001179169.1_CBS1585 | cds-NP_011904.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:167753-169687:- | gene-YHR039C_CBS436 | rna-NM_001179169.1_CBS436 | cds-NP_011904.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:172480-174414:- | gene-YHR039C_CBS6412 | rna-NM_001179169.1_CBS6412 | cds-NP_011904.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:173315-175249:- | gene-YHR039C_CBS6413 | rna-NM_001179169.1_CBS6413 | cds-NP_011904.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:178136-180070:- | gene-YHR039C_CENPK1137D | rna-NM_001179169.1_CENPK1137D | cds-NP_011904.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:172640-174574:- | gene-YHR039C_EthanolRed | rna-NM_001179169.1_EthanolRed | cds-NP_011904.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:173619-175553:- | gene-YHR039C_FaliES1 | rna-NM_001179169.1_FaliES1 | cds-NP_011904.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000273.1:6085-8019:+ | gene-YHR039C_JAY291 | rna-NM_001179169.1_JAY291 | cds-NP_011904.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:179654-181588:- | gene-YHR039C_MUCL30387 | rna-NM_001179169.1_MUCL30387 | cds-NP_011904.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:180124-182058:- | gene-YHR039C_MUCL30388 | rna-NM_001179169.1_MUCL30388 | cds-NP_011904.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:172545-174479:- | gene-YHR039C_MUCL39482 | rna-NM_001179169.1_MUCL39482 | cds-NP_011904.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:179214-181148:- | gene-YHR039C_MUCL42920 | rna-NM_001179169.1_MUCL42920 | cds-NP_011904.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:184757-186691:- | gene-YHR039C_NCIM3186 | rna-NM_001179169.1_NCIM3186 | cds-NP_011904.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:172408-174342:- | gene-YHR039C_NCYC1407 | rna-NM_001179169.1_NCYC1407 | cds-NP_011904.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:174748-176682:- | gene-YHR039C_PE2H3 | rna-NM_001179169.1_PE2H3 | cds-NP_011904.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:182189-184123:- | gene-YHR039C_PE2H4 | rna-NM_001179169.1_PE2H4 | cds-NP_011904.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:184875-186809:- | gene-YHR039C_S288C | rna-NM_001179169.1_S288C | cds-NP_011904.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:171760-173694:+ | gene-YHR039C_SA1 | rna-NM_001179169.1_SA1 | cds-NP_011904.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:174708-176642:- | gene-YHR039C_ThermosaccDry | rna-NM_001179169.1_ThermosaccDry | cds-NP_011904.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:181239-183173:- | gene-YHR039C_VR1 | rna-NM_001179169.1_VR1 | cds-NP_011904.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:166259-168193:- | gene-YHR039C_ZTW1 | rna-NM_001179169.1_ZTW1 | cds-NP_011904.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:172339-174273:- | gene-YHR039C_Sparadoxus | rna-NM_001179169.1_Sparadoxus | cds-NP_011904.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |