Gene name: MSC3
Reference locus (S288C): YLR219W
Gene biotype: protein_coding
Description: Meiotic sister-chromatid recombination protein 3; Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; msc3 mutants are defective in directing meiotic recombination events to homologous chromatids; potential Cdc28p substrate; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): SEG1 (0.896); EIS1 (0.863); LSP1 (0.811); PIL1 (0.789); YGR130C (0.788); YML119W (0.765); SEG2 (0.719); ECM9 (0.716); PKH1 (0.596); NAB6 (0.595); VNX1 (0.583); NCB2 (0.572); INP51 (0.562); ELF1 (0.495); IRS4 (0.489); SLM1 (0.489); RGC1 (0.487); TCB3 (0.454); YSC84 (0.45); CAB3 (0.44)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:528294-530480:+ | gene-YLR219W_AKU4011 | rna-NM_001182106.1_AKU4011 | cds-NP_013320.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:85551-87737:+ | gene-YLR219W_BG1 | rna-NM_001182106.1_BG1 | cds-NP_013320.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:568519-570705:+ | gene-YLR219W_Bruggeman | rna-NM_001182106.1_Bruggeman | cds-NP_013320.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:568168-570354:+ | gene-YLR219W_CAT1 | rna-NM_001182106.1_CAT1 | cds-NP_013320.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:563786-565972:+ | gene-YLR219W_CBS1585 | rna-NM_001182106.1_CBS1585 | cds-NP_013320.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:553986-556172:+ | gene-YLR219W_CBS436 | rna-NM_001182106.1_CBS436 | cds-NP_013320.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:532348-534534:+ | gene-YLR219W_CBS6412 | rna-NM_001182106.1_CBS6412 | cds-NP_013320.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:564083-566269:+ | gene-YLR219W_CBS6413 | rna-NM_001182106.1_CBS6413 | cds-NP_013320.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:558874-561060:+ | gene-YLR219W_CENPK1137D | rna-NM_001182106.1_CENPK1137D | cds-NP_013320.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:527807-529993:+ | gene-YLR219W_EthanolRed | rna-NM_001182106.1_EthanolRed | cds-NP_013320.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:556734-558920:+ | gene-YLR219W_FaliES1 | rna-NM_001182106.1_FaliES1 | cds-NP_013320.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:83636-85822:+ | gene-YLR219W_JAY291 | rna-NM_001182106.1_JAY291 | cds-NP_013320.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:569380-571566:+ | gene-YLR219W_MUCL30387 | rna-NM_001182106.1_MUCL30387 | cds-NP_013320.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:573501-575687:+ | gene-YLR219W_MUCL30388 | rna-NM_001182106.1_MUCL30388 | cds-NP_013320.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:564769-566955:+ | gene-YLR219W_MUCL39482 | rna-NM_001182106.1_MUCL39482 | cds-NP_013320.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:565267-567453:+ | gene-YLR219W_MUCL42920 | rna-NM_001182106.1_MUCL42920 | cds-NP_013320.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:574125-576311:+ | gene-YLR219W_NCIM3186 | rna-NM_001182106.1_NCIM3186 | cds-NP_013320.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:557188-559374:+ | gene-YLR219W_NCYC1407 | rna-NM_001182106.1_NCYC1407 | cds-NP_013320.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:561439-563625:+ | gene-YLR219W_PE2H3 | rna-NM_001182106.1_PE2H3 | cds-NP_013320.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:561183-563369:+ | gene-YLR219W_PE2H4 | rna-NM_001182106.1_PE2H4 | cds-NP_013320.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:574151-576337:+ | gene-YLR219W_S288C | rna-NM_001182106.1_S288C | cds-NP_013320.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:83687-85873:+ | gene-YLR219W_SA1 | rna-NM_001182106.1_SA1 | cds-NP_013320.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:559227-561413:+ | gene-YLR219W_ThermosaccDry | rna-NM_001182106.1_ThermosaccDry | cds-NP_013320.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:570573-572759:+ | gene-YLR219W_VR1 | rna-NM_001182106.1_VR1 | cds-NP_013320.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:83515-85701:+ | gene-YLR219W_ZTW1 | rna-NM_001182106.1_ZTW1 | cds-NP_013320.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:545372-547597:+ | gene-YLR219W_Sparadoxus | rna-NM_001182106.1_Sparadoxus | cds-NP_013320.1_Sparadoxus | 84.6 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |