Gene name: MSC1
Reference locus (S288C): YML128C
Gene biotype: protein_coding
Description: Protein of unknown function; mutant is defective in directing meiotic recombination events to homologous chromatids; the authentic, non-tagged protein is detected in highly purified mitochondria and is phosphorylated
Top 10 interactors (score): RTC3 (0.997); TFS1 (0.994); DCS2 (0.993); FMP16 (0.992); GAD1 (0.989); SOL4 (0.988); RTN2 (0.983); CTT1 (0.982); YDL124W (0.98); NTH1 (0.975); GTT1 (0.974); DDR2 (0.974); TSL1 (0.974); ALD3 (0.972); OM45 (0.969); NQM1 (0.969); YMR090W (0.966); HSP12 (0.958); YLR345W (0.952); HBT1 (0.948)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:8847-10388:- | gene-YML128C_AKU4011 | rna-NM_001182491.1_AKU4011 | cds-NP_013578.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:466756-468297:+ | gene-YML128C_BG1 | rna-NM_001182491.1_BG1 | cds-NP_013578.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:15091-16632:- | gene-YML128C_Bruggeman | rna-NM_001182491.1_Bruggeman | cds-NP_013578.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:16671-18212:- | gene-YML128C_CAT1 | rna-NM_001182491.1_CAT1 | cds-NP_013578.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:8847-10388:- | gene-YML128C_CBS1585 | rna-NM_001182491.1_CBS1585 | cds-NP_013578.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:14851-16392:- | gene-YML128C_CBS436 | rna-NM_001182491.1_CBS436 | cds-NP_013578.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:9609-11150:- | gene-YML128C_CBS6412 | rna-NM_001182491.1_CBS6412 | cds-NP_013578.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:8073-9614:- | gene-YML128C_CBS6413 | rna-NM_001182491.1_CBS6413 | cds-NP_013578.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:9654-11195:- | gene-YML128C_CENPK1137D | rna-NM_001182491.1_CENPK1137D | cds-NP_013578.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:9362-10903:- | gene-YML128C_EthanolRed | rna-NM_001182491.1_EthanolRed | cds-NP_013578.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:9635-11176:- | gene-YML128C_FaliES1 | rna-NM_001182491.1_FaliES1 | cds-NP_013578.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000345.1:79060-80601:+ | gene-YML128C_JAY291 | rna-NM_001182491.1_JAY291 | cds-NP_013578.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:13135-14676:- | gene-YML128C_MUCL30387 | rna-NM_001182491.1_MUCL30387 | cds-NP_013578.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:16554-18095:- | gene-YML128C_MUCL30388 | rna-NM_001182491.1_MUCL30388 | cds-NP_013578.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:8901-10442:- | gene-YML128C_MUCL39482 | rna-NM_001182491.1_MUCL39482 | cds-NP_013578.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:12324-13865:- | gene-YML128C_MUCL42920 | rna-NM_001182491.1_MUCL42920 | cds-NP_013578.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:15089-16630:- | gene-YML128C_NCIM3186 | rna-NM_001182491.1_NCIM3186 | cds-NP_013578.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:9656-11197:- | gene-YML128C_NCYC1407 | rna-NM_001182491.1_NCYC1407 | cds-NP_013578.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:15039-16580:- | gene-YML128C_PE2H3 | rna-NM_001182491.1_PE2H3 | cds-NP_013578.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:14977-16518:- | gene-YML128C_PE2H4 | rna-NM_001182491.1_PE2H4 | cds-NP_013578.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:15135-16676:- | gene-YML128C_S288C | rna-NM_001182491.1_S288C | cds-NP_013578.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000054.1:6965-8506:- | gene-YML128C_SA1 | rna-NM_001182491.1_SA1 | cds-NP_013578.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:8937-10478:- | gene-YML128C_ThermosaccDry | rna-NM_001182491.1_ThermosaccDry | cds-NP_013578.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:13342-14883:- | gene-YML128C_VR1 | rna-NM_001182491.1_VR1 | cds-NP_013578.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000026.1:8126-9667:- | gene-YML128C_ZTW1 | rna-NM_001182491.1_ZTW1 | cds-NP_013578.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:20039-21580:- | gene-YML128C_Sparadoxus | rna-NM_001182491.1_Sparadoxus | cds-NP_013578.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |