Gene name: MSA2
Reference locus (S288C): YKR077W
Gene biotype: protein_coding
Description: Putative transcriptional activator; interacts with G1-specific transcription factor MBF and G1-specific promoters; MSA2 has a paralog, MSA1, that arose from the whole genome duplication
Top 10 interactors (score): MSA1 (0.926); SWI4 (0.874); STE12 (0.844); SWI6 (0.786); TEC1 (0.765); NRM1 (0.722); SRL3 (0.705); CDC28 (0.695); MBP1 (0.688); WHI5 (0.659); ORC3 (0.613); PCL9 (0.57); STB1 (0.556); CSI2 (0.528); VHS2 (0.521); CLN3 (0.499); BUD2 (0.495); CLB5 (0.491); DBF4 (0.488); TOS6 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:569682-570773:+ | gene-YKR077W_AKU4011 | rna-NM_001179867.1_AKU4011 | cds-NP_013003.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:73453-74544:- | gene-YKR077W_BG1 | rna-NM_001179867.1_BG1 | cds-NP_013003.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:592260-593351:+ | gene-YKR077W_Bruggeman | rna-NM_001179867.1_Bruggeman | cds-NP_013003.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:587780-588871:+ | gene-YKR077W_CAT1 | rna-NM_001179867.1_CAT1 | cds-NP_013003.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:582169-583260:+ | gene-YKR077W_CBS1585 | rna-NM_001179867.1_CBS1585 | cds-NP_013003.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:580554-581645:+ | gene-YKR077W_CBS436 | rna-NM_001179867.1_CBS436 | cds-NP_013003.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:565457-566548:+ | gene-YKR077W_CBS6412 | rna-NM_001179867.1_CBS6412 | cds-NP_013003.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:581987-583078:+ | gene-YKR077W_CBS6413 | rna-NM_001179867.1_CBS6413 | cds-NP_013003.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:583307-584398:+ | gene-YKR077W_CENPK1137D | rna-NM_001179867.1_CENPK1137D | cds-NP_013003.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:579492-580583:+ | gene-YKR077W_EthanolRed | rna-NM_001179867.1_EthanolRed | cds-NP_013003.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:583387-584478:+ | gene-YKR077W_FaliES1 | rna-NM_001179867.1_FaliES1 | cds-NP_013003.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000426.1:60455-61546:- | gene-YKR077W_JAY291 | rna-NM_001179867.1_JAY291 | cds-NP_013003.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:591756-592847:+ | gene-YKR077W_MUCL30387 | rna-NM_001179867.1_MUCL30387 | cds-NP_013003.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:586098-587189:+ | gene-YKR077W_MUCL30388 | rna-NM_001179867.1_MUCL30388 | cds-NP_013003.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:581010-582101:+ | gene-YKR077W_MUCL39482 | rna-NM_001179867.1_MUCL39482 | cds-NP_013003.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:587033-588124:+ | gene-YKR077W_MUCL42920 | rna-NM_001179867.1_MUCL42920 | cds-NP_013003.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:583642-584733:+ | gene-YKR077W_NCIM3186 | rna-NM_001179867.1_NCIM3186 | cds-NP_013003.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:581422-582513:+ | gene-YKR077W_NCYC1407 | rna-NM_001179867.1_NCYC1407 | cds-NP_013003.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:606589-607680:+ | gene-YKR077W_PE2H3 | rna-NM_001179867.1_PE2H3 | cds-NP_013003.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:590993-592084:+ | gene-YKR077W_PE2H4 | rna-NM_001179867.1_PE2H4 | cds-NP_013003.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:583653-584744:+ | gene-YKR077W_S288C | rna-NM_001179867.1_S288C | cds-NP_013003.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:97107-98198:- | gene-YKR077W_SA1 | rna-NM_001179867.1_SA1 | cds-NP_013003.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:582634-583725:+ | gene-YKR077W_ThermosaccDry | rna-NM_001179867.1_ThermosaccDry | cds-NP_013003.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:581899-582990:+ | gene-YKR077W_VR1 | rna-NM_001179867.1_VR1 | cds-NP_013003.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:579617-580708:+ | gene-YKR077W_ZTW1 | rna-NM_001179867.1_ZTW1 | cds-NP_013003.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:604865-605956:+ | gene-YKR077W_Sparadoxus | rna-NM_001179867.1_Sparadoxus | cds-NP_013003.1_Sparadoxus | 87.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |