Gene name: MRT4
Reference locus (S288C): YKL009W
Gene biotype: protein_coding
Description: Protein involved in mRNA turnover and ribosome assembly; required at post-transcriptional step for efficient retrotransposition; localizes to the nucleolus; Belongs to the universal ribosomal protein uL10 family
Top 10 interactors (score): RPF2 (0.999); EBP2 (0.999); NUG1 (0.999); ARX1 (0.999); ERB1 (0.999); NIP7 (0.999); NOP7 (0.999); HAS1 (0.999); NSA2 (0.999); NOG2 (0.999); RRP1 (0.999); RLP24 (0.999); NSA1 (0.999); SPB1 (0.999); YTM1 (0.999); RRS1 (0.999); RPF1 (0.999); NOP2 (0.999); IMP3 (0.999); NOP15 (0.999)
Homologues (species, bitscore): MRTO4 (Homo sapiens, 166.8); Mrto4 (Mus musculus, 166.4); mrto4 (Danio rerio, 169.1); mrto4 (Xenopus tropicalis, 166.0); RpLP0-like (Drosophila melanogaster, 134.4); F10E7.5 (Caenorhabditis elegans, 122.5); AT1G25260 (Arabidopsis thaliana, 134.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:412260-412970:+ | gene-YKL009W_AKU4011 | rna-NM_001179575.1_AKU4011 | cds-NP_012916.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:230933-231643:- | gene-YKL009W_BG1 | rna-NM_001179575.1_BG1 | cds-NP_012916.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:433965-434675:+ | gene-YKL009W_Bruggeman | rna-NM_001179575.1_Bruggeman | cds-NP_012916.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:429072-429782:+ | gene-YKL009W_CAT1 | rna-NM_001179575.1_CAT1 | cds-NP_012916.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:424980-425690:+ | gene-YKL009W_CBS1585 | rna-NM_001179575.1_CBS1585 | cds-NP_012916.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:423843-424553:+ | gene-YKL009W_CBS436 | rna-NM_001179575.1_CBS436 | cds-NP_012916.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:409136-409846:+ | gene-YKL009W_CBS6412 | rna-NM_001179575.1_CBS6412 | cds-NP_012916.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:424835-425545:+ | gene-YKL009W_CBS6413 | rna-NM_001179575.1_CBS6413 | cds-NP_012916.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:425919-426629:+ | gene-YKL009W_CENPK1137D | rna-NM_001179575.1_CENPK1137D | cds-NP_012916.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:422757-423467:+ | gene-YKL009W_EthanolRed | rna-NM_001179575.1_EthanolRed | cds-NP_012916.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:424847-425557:+ | gene-YKL009W_FaliES1 | rna-NM_001179575.1_FaliES1 | cds-NP_012916.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000142.1:5494-6204:- | gene-YKL009W_JAY291 | rna-NM_001179575.1_JAY291 | cds-NP_012916.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:433280-433990:+ | gene-YKL009W_MUCL30387 | rna-NM_001179575.1_MUCL30387 | cds-NP_012916.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:428889-429599:+ | gene-YKL009W_MUCL30388 | rna-NM_001179575.1_MUCL30388 | cds-NP_012916.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:424297-425007:+ | gene-YKL009W_MUCL39482 | rna-NM_001179575.1_MUCL39482 | cds-NP_012916.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:430126-430836:+ | gene-YKL009W_MUCL42920 | rna-NM_001179575.1_MUCL42920 | cds-NP_012916.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:426231-426941:+ | gene-YKL009W_NCIM3186 | rna-NM_001179575.1_NCIM3186 | cds-NP_012916.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:424489-425199:+ | gene-YKL009W_NCYC1407 | rna-NM_001179575.1_NCYC1407 | cds-NP_012916.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:449180-449890:+ | gene-YKL009W_PE2H3 | rna-NM_001179575.1_PE2H3 | cds-NP_012916.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:433922-434632:+ | gene-YKL009W_PE2H4 | rna-NM_001179575.1_PE2H4 | cds-NP_012916.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:426242-426952:+ | gene-YKL009W_S288C | rna-NM_001179575.1_S288C | cds-NP_012916.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:104524-105234:+ | gene-YKL009W_SA1 | rna-NM_001179575.1_SA1 | cds-NP_012916.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:424946-425656:+ | gene-YKL009W_ThermosaccDry | rna-NM_001179575.1_ThermosaccDry | cds-NP_012916.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:424202-424912:+ | gene-YKL009W_VR1 | rna-NM_001179575.1_VR1 | cds-NP_012916.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:422974-423684:+ | gene-YKL009W_ZTW1 | rna-NM_001179575.1_ZTW1 | cds-NP_012916.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:447949-448659:+ | gene-YKL009W_Sparadoxus | rna-NM_001179575.1_Sparadoxus | cds-NP_012916.1_Sparadoxus | 93.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |