Gene name: MRPS17
Reference locus (S288C): YMR188C
Gene biotype: protein_coding
Description: Mitochondrial 37s ribosomal protein mrps17; Mitochondrial ribosomal protein of the small subunit
Top 10 interactors (score): MRPS8 (0.999); MRP17 (0.999); RSM23 (0.999); MRPS16 (0.999); RSM10 (0.999); MRP4 (0.999); MRPL9 (0.999); MRPS28 (0.998); MRPL10 (0.998); MRPS9 (0.998); RSM18 (0.998); MRPL23 (0.997); RSM24 (0.997); MRPL4 (0.997); MRPS12 (0.997); MRPS5 (0.997); RSM19 (0.996); RSM25 (0.996); RSM7 (0.996); MRPS18 (0.996)
Homologues (species, bitscore): emb1129 (Arabidopsis thaliana, 55.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:676223-676936:- | gene-YMR188C_AKU4011 | rna-NM_001182694.1_AKU4011 | cds-NP_013913.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:277646-278359:+ | gene-YMR188C_BG1 | rna-NM_001182694.1_BG1 | cds-NP_013913.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:620453-621166:- | gene-YMR188C_Bruggeman | rna-NM_001182694.1_Bruggeman | cds-NP_013913.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:623696-624409:- | gene-YMR188C_CAT1 | rna-NM_001182694.1_CAT1 | cds-NP_013913.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:608479-609192:- | gene-YMR188C_CBS1585 | rna-NM_001182694.1_CBS1585 | cds-NP_013913.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:612742-613455:- | gene-YMR188C_CBS436 | rna-NM_001182694.1_CBS436 | cds-NP_013913.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:720038-720751:- | gene-YMR188C_CBS6412 | rna-NM_001182694.1_CBS6412 | cds-NP_013913.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:607628-608341:- | gene-YMR188C_CBS6413 | rna-NM_001182694.1_CBS6413 | cds-NP_013913.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:630904-631617:- | gene-YMR188C_CENPK1137D | rna-NM_001182694.1_CENPK1137D | cds-NP_013913.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:668668-669381:- | gene-YMR188C_EthanolRed | rna-NM_001182694.1_EthanolRed | cds-NP_013913.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:614324-615037:- | gene-YMR188C_FaliES1 | rna-NM_001182694.1_FaliES1 | cds-NP_013913.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:170970-171683:+ | gene-YMR188C_JAY291 | rna-NM_001182694.1_JAY291 | cds-NP_013913.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:613999-614712:- | gene-YMR188C_MUCL30387 | rna-NM_001182694.1_MUCL30387 | cds-NP_013913.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:620779-621492:- | gene-YMR188C_MUCL30388 | rna-NM_001182694.1_MUCL30388 | cds-NP_013913.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:609551-610264:- | gene-YMR188C_MUCL39482 | rna-NM_001182694.1_MUCL39482 | cds-NP_013913.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:616898-617611:- | gene-YMR188C_MUCL42920 | rna-NM_001182694.1_MUCL42920 | cds-NP_013913.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:636245-636958:- | gene-YMR188C_NCIM3186 | rna-NM_001182694.1_NCIM3186 | cds-NP_013913.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:609203-609916:- | gene-YMR188C_NCYC1407 | rna-NM_001182694.1_NCYC1407 | cds-NP_013913.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:619086-619799:- | gene-YMR188C_PE2H3 | rna-NM_001182694.1_PE2H3 | cds-NP_013913.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:620072-620785:- | gene-YMR188C_PE2H4 | rna-NM_001182694.1_PE2H4 | cds-NP_013913.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:636291-637004:- | gene-YMR188C_S288C | rna-NM_001182694.1_S288C | cds-NP_013913.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:171096-171809:+ | gene-YMR188C_SA1 | rna-NM_001182694.1_SA1 | cds-NP_013913.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:610450-611163:- | gene-YMR188C_ThermosaccDry | rna-NM_001182694.1_ThermosaccDry | cds-NP_013913.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:623619-624332:- | gene-YMR188C_VR1 | rna-NM_001182694.1_VR1 | cds-NP_013913.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:26238-26951:- | gene-YMR188C_ZTW1 | rna-NM_001182694.1_ZTW1 | cds-NP_013913.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:628347-629060:- | gene-YMR188C_Sparadoxus | rna-NM_001182694.1_Sparadoxus | cds-NP_013913.1_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |