Gene name: MRPS16
Reference locus (S288C): YPL013C
Gene biotype: protein_coding
Description: Mitochondrial 37s ribosomal protein mrps16; Mitochondrial ribosomal protein of the small subunit
Top 10 interactors (score): MRPL22 (0.999); RSM24 (0.999); MRPL51 (0.999); MRP2 (0.999); MRPS18 (0.999); RSM18 (0.999); IMG1 (0.999); MRPS5 (0.999); MRPL24 (0.999); MRPL10 (0.999); YML6 (0.999); MRPS8 (0.999); MRP7 (0.999); MRP4 (0.999); MRP20 (0.999); MRPL8 (0.999); RML2 (0.999); RSM10 (0.999); MRPL4 (0.999); MRPS12 (0.999)
Homologues (species, bitscore): MRPS16 (Homo sapiens, 65.1); Mrps16 (Mus musculus, 64.3); mrps16 (Danio rerio, 65.1); mrps16 (Xenopus tropicalis, 72.4); MRpS16 (Drosophila melanogaster, 55.5); AT5G56940 (Arabidopsis thaliana, 84.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:500476-500841:- | gene-YPL013C_AKU4011 | rna-NM_001183827.1_AKU4011 | cds-NP_015312.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:396381-396746:+ | gene-YPL013C_BG1 | rna-NM_001183827.1_BG1 | cds-NP_015312.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:577411-577776:- | gene-YPL013C_Bruggeman | rna-NM_001183827.1_Bruggeman | cds-NP_015312.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:619877-620242:- | gene-YPL013C_CAT1 | rna-NM_001183827.1_CAT1 | cds-NP_015312.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:504638-505003:- | gene-YPL013C_CBS1585 | rna-NM_001183827.1_CBS1585 | cds-NP_015312.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:518682-519047:- | gene-YPL013C_CBS436 | rna-NM_001183827.1_CBS436 | cds-NP_015312.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:508390-508755:- | gene-YPL013C_CBS6412 | rna-NM_001183827.1_CBS6412 | cds-NP_015312.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:501113-501478:- | gene-YPL013C_CBS6413 | rna-NM_001183827.1_CBS6413 | cds-NP_015312.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:528992-529357:- | gene-YPL013C_CENPK1137D | rna-NM_001183827.1_CENPK1137D | cds-NP_015312.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:498897-499262:- | gene-YPL013C_EthanolRed | rna-NM_001183827.1_EthanolRed | cds-NP_015312.1_EthanolRed | 98.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:506727-507092:- | gene-YPL013C_FaliES1 | rna-NM_001183827.1_FaliES1 | cds-NP_015312.1_FaliES1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:115275-115640:- | gene-YPL013C_JAY291 | rna-NM_001183827.1_JAY291 | cds-NP_015312.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:518361-518726:- | gene-YPL013C_MUCL30387 | rna-NM_001183827.1_MUCL30387 | cds-NP_015312.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:517468-517833:- | gene-YPL013C_MUCL30388 | rna-NM_001183827.1_MUCL30388 | cds-NP_015312.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:497878-498243:- | gene-YPL013C_MUCL39482 | rna-NM_001183827.1_MUCL39482 | cds-NP_015312.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:556952-557317:- | gene-YPL013C_MUCL42920 | rna-NM_001183827.1_MUCL42920 | cds-NP_015312.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:528968-529333:- | gene-YPL013C_NCIM3186 | rna-NM_001183827.1_NCIM3186 | cds-NP_015312.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:505152-505517:- | gene-YPL013C_NCYC1407 | rna-NM_001183827.1_NCYC1407 | cds-NP_015312.1_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:511803-512168:- | gene-YPL013C_PE2H3 | rna-NM_001183827.1_PE2H3 | cds-NP_015312.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:511418-511783:- | gene-YPL013C_PE2H4 | rna-NM_001183827.1_PE2H4 | cds-NP_015312.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:528985-529350:- | gene-YPL013C_S288C | rna-NM_001183827.1_S288C | cds-NP_015312.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000076.1:25715-26080:- | gene-YPL013C_SA1 | rna-NM_001183827.1_SA1 | cds-NP_015312.1_SA1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:506526-506891:- | gene-YPL013C_ThermosaccDry | rna-NM_001183827.1_ThermosaccDry | cds-NP_015312.1_ThermosaccDry | 98.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:521903-522268:- | gene-YPL013C_VR1 | rna-NM_001183827.1_VR1 | cds-NP_015312.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:505811-506176:- | gene-YPL013C_ZTW1 | rna-NM_001183827.1_ZTW1 | cds-NP_015312.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:505691-506056:- | gene-YPL013C_Sparadoxus | rna-NM_001183827.1_Sparadoxus | cds-NP_015312.1_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |