Gene name: MRPL40
Reference locus (S288C): YPL173W
Gene biotype: protein_coding
Description: Mitochondrial 54s ribosomal protein yml40; Mitochondrial ribosomal protein of the large subunit
Top 10 interactors (score): MRP20 (0.997); MRPL4 (0.995); MRPL17 (0.992); MRPL8 (0.991); MRPL32 (0.99); IMG1 (0.989); MRP7 (0.988); IMG2 (0.987); MRPL24 (0.984); MRPL36 (0.983); MRPL25 (0.977); MRPL7 (0.976); MRPL35 (0.973); MRPL15 (0.973); MRPL20 (0.973); MRPS16 (0.973); MRPL3 (0.971); MRPS5 (0.97); MRPL33 (0.969); MRP10 (0.963)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:200815-201708:+ | gene-YPL173W_AKU4011 | rna-NM_001183987.1_AKU4011 | cds-NP_015152.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:406476-407369:+ | gene-YPL173W_BG1 | rna-NM_001183987.1_BG1 | cds-NP_015152.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:226695-227588:+ | gene-YPL173W_Bruggeman | rna-NM_001183987.1_Bruggeman | cds-NP_015152.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:223470-224363:+ | gene-YPL173W_CAT1 | rna-NM_001183987.1_CAT1 | cds-NP_015152.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:204877-205770:+ | gene-YPL173W_CBS1585 | rna-NM_001183987.1_CBS1585 | cds-NP_015152.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:219533-220426:+ | gene-YPL173W_CBS436 | rna-NM_001183987.1_CBS436 | cds-NP_015152.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:209553-210446:+ | gene-YPL173W_CBS6412 | rna-NM_001183987.1_CBS6412 | cds-NP_015152.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:201516-202409:+ | gene-YPL173W_CBS6413 | rna-NM_001183987.1_CBS6413 | cds-NP_015152.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:223027-223920:+ | gene-YPL173W_CENPK1137D | rna-NM_001183987.1_CENPK1137D | cds-NP_015152.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:199555-200448:+ | gene-YPL173W_EthanolRed | rna-NM_001183987.1_EthanolRed | cds-NP_015152.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:207147-208040:+ | gene-YPL173W_FaliES1 | rna-NM_001183987.1_FaliES1 | cds-NP_015152.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:157869-158761:- | gene-YPL173W_JAY291 | rna-NM_001183987.1_JAY291 | cds-NP_015152.1_JAY291 | 99.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:218042-218935:+ | gene-YPL173W_MUCL30387 | rna-NM_001183987.1_MUCL30387 | cds-NP_015152.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:216063-216956:+ | gene-YPL173W_MUCL30388 | rna-NM_001183987.1_MUCL30388 | cds-NP_015152.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:198206-199099:+ | gene-YPL173W_MUCL39482 | rna-NM_001183987.1_MUCL39482 | cds-NP_015152.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:254930-255823:+ | gene-YPL173W_MUCL42920 | rna-NM_001183987.1_MUCL42920 | cds-NP_015152.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:223126-224019:+ | gene-YPL173W_NCIM3186 | rna-NM_001183987.1_NCIM3186 | cds-NP_015152.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:204662-205555:+ | gene-YPL173W_NCYC1407 | rna-NM_001183987.1_NCYC1407 | cds-NP_015152.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:212095-212988:+ | gene-YPL173W_PE2H3 | rna-NM_001183987.1_PE2H3 | cds-NP_015152.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:211738-212631:+ | gene-YPL173W_PE2H4 | rna-NM_001183987.1_PE2H4 | cds-NP_015152.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:223143-224036:+ | gene-YPL173W_S288C | rna-NM_001183987.1_S288C | cds-NP_015152.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:149644-150537:- | gene-YPL173W_SA1 | rna-NM_001183987.1_SA1 | cds-NP_015152.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:206945-207838:+ | gene-YPL173W_ThermosaccDry | rna-NM_001183987.1_ThermosaccDry | cds-NP_015152.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:221868-222761:+ | gene-YPL173W_VR1 | rna-NM_001183987.1_VR1 | cds-NP_015152.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:206274-207167:+ | gene-YPL173W_ZTW1 | rna-NM_001183987.1_ZTW1 | cds-NP_015152.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:207859-208752:+ | gene-YPL173W_Sparadoxus | rna-NM_001183987.1_Sparadoxus | cds-NP_015152.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |