Gene name: MRPL4
Reference locus (S288C): YLR439W
Gene biotype: protein_coding
Description: Mitochondrial ribosomal protein of the large subunit; homolog of prokaryotic L29 ribosomal protein; located at the ribosomal tunnel exit
Top 10 interactors (score): MRPS28 (0.999); MRP20 (0.999); MRPL27 (0.999); MRPL22 (0.999); MRPL17 (0.999); MRPL10 (0.999); MRPL32 (0.999); MRPL8 (0.999); YML6 (0.999); MRPS16 (0.999); RSM18 (0.999); RSM7 (0.999); MRPL9 (0.999); MRPL28 (0.999); MRPL16 (0.999); IMG1 (0.999); MRPS5 (0.999); MRPL23 (0.999); MRP7 (0.999); RML2 (0.998)
Homologues (species, bitscore): AT1G07830 (Arabidopsis thaliana, 61.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:952757-953716:+ | gene-YLR439W_AKU4011 | rna-NM_001182327.1_AKU4011 | cds-NP_013544.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:185222-186181:+ | gene-YLR439W_BG1 | rna-NM_001182327.1_BG1 | cds-NP_013544.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:991066-992025:+ | gene-YLR439W_Bruggeman | rna-NM_001182327.1_Bruggeman | cds-NP_013544.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:987068-988027:+ | gene-YLR439W_CAT1 | rna-NM_001182327.1_CAT1 | cds-NP_013544.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:988348-989307:+ | gene-YLR439W_CBS1585 | rna-NM_001182327.1_CBS1585 | cds-NP_013544.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:977700-978659:+ | gene-YLR439W_CBS436 | rna-NM_001182327.1_CBS436 | cds-NP_013544.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1024388-1025347:+ | gene-YLR439W_CBS6412 | rna-NM_001182327.1_CBS6412 | cds-NP_013544.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:989136-990095:+ | gene-YLR439W_CBS6413 | rna-NM_001182327.1_CBS6413 | cds-NP_013544.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:999108-1000067:+ | gene-YLR439W_CENPK1137D | rna-NM_001182327.1_CENPK1137D | cds-NP_013544.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:945777-946736:+ | gene-YLR439W_EthanolRed | rna-NM_001182327.1_EthanolRed | cds-NP_013544.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:981048-982007:+ | gene-YLR439W_FaliES1 | rna-NM_001182327.1_FaliES1 | cds-NP_013544.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000194.1:36674-37633:- | gene-YLR439W_JAY291 | rna-NM_001182327.1_JAY291 | cds-NP_013544.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:989918-990877:+ | gene-YLR439W_MUCL30387 | rna-NM_001182327.1_MUCL30387 | cds-NP_013544.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:997275-998234:+ | gene-YLR439W_MUCL30388 | rna-NM_001182327.1_MUCL30388 | cds-NP_013544.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:989568-990527:+ | gene-YLR439W_MUCL39482 | rna-NM_001182327.1_MUCL39482 | cds-NP_013544.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:990066-991025:+ | gene-YLR439W_MUCL42920 | rna-NM_001182327.1_MUCL42920 | cds-NP_013544.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1014465-1015424:+ | gene-YLR439W_NCIM3186 | rna-NM_001182327.1_NCIM3186 | cds-NP_013544.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:999002-999961:+ | gene-YLR439W_NCYC1407 | rna-NM_001182327.1_NCYC1407 | cds-NP_013544.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:985453-986412:+ | gene-YLR439W_PE2H3 | rna-NM_001182327.1_PE2H3 | cds-NP_013544.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:985197-986156:+ | gene-YLR439W_PE2H4 | rna-NM_001182327.1_PE2H4 | cds-NP_013544.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1014491-1015450:+ | gene-YLR439W_S288C | rna-NM_001182327.1_S288C | cds-NP_013544.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:44501-45460:- | gene-YLR439W_SA1 | rna-NM_001182327.1_SA1 | cds-NP_013544.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:984127-985086:+ | gene-YLR439W_ThermosaccDry | rna-NM_001182327.1_ThermosaccDry | cds-NP_013544.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:990558-991517:+ | gene-YLR439W_VR1 | rna-NM_001182327.1_VR1 | cds-NP_013544.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:314399-315358:+ | gene-YLR439W_ZTW1 | rna-NM_001182327.1_ZTW1 | cds-NP_013544.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:963468-964427:+ | gene-YLR439W_Sparadoxus | rna-NM_001182327.1_Sparadoxus | cds-NP_013544.1_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |