Gene name: MRPL38
Reference locus (S288C): YKL170W
Gene biotype: protein_coding
Description: Mitochondrial ribosomal protein of the large subunit; appears as two protein spots (YmL34 and YmL38) on two-dimensional SDS gels; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RPL5 (0.998); RPL10 (0.997); RPS2 (0.997); RPS13 (0.997); RPS15 (0.997); RPL25 (0.997); RPS3 (0.997); RPL3 (0.996); RPP0 (0.996); RPL39 (0.996); RPL30 (0.996); RPL32 (0.996); RPL28 (0.996); RPS20 (0.996); RPS31 (0.996); RPS12 (0.995); RPL29 (0.995); RPL38 (0.995); ASC1 (0.995); MRPL9 (0.994)
Homologues (species, bitscore): AT5G46160 (Arabidopsis thaliana, 70.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:117495-117911:+ | gene-YKL170W_AKU4011 | rna-NM_001179736.1_AKU4011 | cds-NP_012751.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:94044-94460:+ | gene-YKL170W_BG1 | rna-NM_001179736.1_BG1 | cds-NP_012751.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:134897-135313:+ | gene-YKL170W_Bruggeman | rna-NM_001179736.1_Bruggeman | cds-NP_012751.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:129839-130255:+ | gene-YKL170W_CAT1 | rna-NM_001179736.1_CAT1 | cds-NP_012751.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:129479-129895:+ | gene-YKL170W_CBS1585 | rna-NM_001179736.1_CBS1585 | cds-NP_012751.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:128235-128651:+ | gene-YKL170W_CBS436 | rna-NM_001179736.1_CBS436 | cds-NP_012751.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:115069-115485:+ | gene-YKL170W_CBS6412 | rna-NM_001179736.1_CBS6412 | cds-NP_012751.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:130195-130611:+ | gene-YKL170W_CBS6413 | rna-NM_001179736.1_CBS6413 | cds-NP_012751.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:130460-130876:+ | gene-YKL170W_CENPK1137D | rna-NM_001179736.1_CENPK1137D | cds-NP_012751.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:128399-128815:+ | gene-YKL170W_EthanolRed | rna-NM_001179736.1_EthanolRed | cds-NP_012751.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:129100-129516:+ | gene-YKL170W_FaliES1 | rna-NM_001179736.1_FaliES1 | cds-NP_012751.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000006.2:128058-128474:+ | gene-YKL170W_JAY291 | rna-NM_001179736.1_JAY291 | cds-NP_012751.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:137185-137601:+ | gene-YKL170W_MUCL30387 | rna-NM_001179736.1_MUCL30387 | cds-NP_012751.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:131541-131957:+ | gene-YKL170W_MUCL30388 | rna-NM_001179736.1_MUCL30388 | cds-NP_012751.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:129534-129950:+ | gene-YKL170W_MUCL39482 | rna-NM_001179736.1_MUCL39482 | cds-NP_012751.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:133860-134276:+ | gene-YKL170W_MUCL42920 | rna-NM_001179736.1_MUCL42920 | cds-NP_012751.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:130623-131039:+ | gene-YKL170W_NCIM3186 | rna-NM_001179736.1_NCIM3186 | cds-NP_012751.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:129558-129974:+ | gene-YKL170W_NCYC1407 | rna-NM_001179736.1_NCYC1407 | cds-NP_012751.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:136610-137026:+ | gene-YKL170W_PE2H3 | rna-NM_001179736.1_PE2H3 | cds-NP_012751.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:132904-133320:+ | gene-YKL170W_PE2H4 | rna-NM_001179736.1_PE2H4 | cds-NP_012751.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:130634-131050:+ | gene-YKL170W_S288C | rna-NM_001179736.1_S288C | cds-NP_012751.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:46834-47250:+ | gene-YKL170W_SA1 | rna-NM_001179736.1_SA1 | cds-NP_012751.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:129800-130216:+ | gene-YKL170W_ThermosaccDry | rna-NM_001179736.1_ThermosaccDry | cds-NP_012751.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:128315-128731:+ | gene-YKL170W_VR1 | rna-NM_001179736.1_VR1 | cds-NP_012751.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:128190-128606:+ | gene-YKL170W_ZTW1 | rna-NM_001179736.1_ZTW1 | cds-NP_012751.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:142752-143168:+ | gene-YKL170W_Sparadoxus | rna-NM_001179736.1_Sparadoxus | cds-NP_012751.1_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |