Gene name: MRPL28
Reference locus (S288C): YDR462W
Gene biotype: protein_coding
Description: Mitochondrial 54s ribosomal protein yml28; Mitochondrial ribosomal protein of the large subunit; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): MRPL32 (0.999); MRP7 (0.999); RTC6 (0.999); MRPL8 (0.999); MRPS28 (0.999); MRPL16 (0.999); MRPL4 (0.999); MRPS5 (0.999); IMG1 (0.999); MRPS16 (0.999); RSM18 (0.999); MRPL17 (0.999); MRPL27 (0.999); YML6 (0.999); MRPL9 (0.998); RML2 (0.998); MRPL10 (0.998); IMG2 (0.998); MRPL22 (0.997); MRPL51 (0.997)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1325980-1326423:+ | gene-YDR462W_AKU4011 | rna-NM_001180770.1_AKU4011 | cds-NP_010750.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:234094-234537:+ | gene-YDR462W_BG1 | rna-NM_001180770.1_BG1 | cds-NP_010750.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1357407-1357850:+ | gene-YDR462W_Bruggeman | rna-NM_001180770.1_Bruggeman | cds-NP_010750.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1334550-1334993:+ | gene-YDR462W_CAT1 | rna-NM_001180770.1_CAT1 | cds-NP_010750.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1320285-1320728:+ | gene-YDR462W_CBS1585 | rna-NM_001180770.1_CBS1585 | cds-NP_010750.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1339658-1340101:+ | gene-YDR462W_CBS436 | rna-NM_001180770.1_CBS436 | cds-NP_010750.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1315912-1316355:+ | gene-YDR462W_CBS6412 | rna-NM_001180770.1_CBS6412 | cds-NP_010750.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1338923-1339366:+ | gene-YDR462W_CBS6413 | rna-NM_001180770.1_CBS6413 | cds-NP_010750.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1384769-1385212:+ | gene-YDR462W_CENPK1137D | rna-NM_001180770.1_CENPK1137D | cds-NP_010750.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1329328-1329771:+ | gene-YDR462W_EthanolRed | rna-NM_001180770.1_EthanolRed | cds-NP_010750.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1332881-1333324:+ | gene-YDR462W_FaliES1 | rna-NM_001180770.1_FaliES1 | cds-NP_010750.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:31144-31587:+ | gene-YDR462W_JAY291 | rna-NM_001180770.1_JAY291 | cds-NP_010750.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1339898-1340341:+ | gene-YDR462W_MUCL30387 | rna-NM_001180770.1_MUCL30387 | cds-NP_010750.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1321921-1322364:+ | gene-YDR462W_MUCL30388 | rna-NM_001180770.1_MUCL30388 | cds-NP_010750.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1311769-1312212:+ | gene-YDR462W_MUCL39482 | rna-NM_001180770.1_MUCL39482 | cds-NP_010750.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1254574-1255017:+ | gene-YDR462W_MUCL42920 | rna-NM_001180770.1_MUCL42920 | cds-NP_010750.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1385996-1386439:+ | gene-YDR462W_NCIM3186 | rna-NM_001180770.1_NCIM3186 | cds-NP_010750.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1325542-1325985:+ | gene-YDR462W_NCYC1407 | rna-NM_001180770.1_NCYC1407 | cds-NP_010750.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1336393-1336836:+ | gene-YDR462W_PE2H3 | rna-NM_001180770.1_PE2H3 | cds-NP_010750.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1341966-1342409:+ | gene-YDR462W_PE2H4 | rna-NM_001180770.1_PE2H4 | cds-NP_010750.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1386073-1386516:+ | gene-YDR462W_S288C | rna-NM_001180770.1_S288C | cds-NP_010750.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:230644-231087:- | gene-YDR462W_SA1 | rna-NM_001180770.1_SA1 | cds-NP_010750.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1337103-1337546:+ | gene-YDR462W_ThermosaccDry | rna-NM_001180770.1_ThermosaccDry | cds-NP_010750.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1352836-1353279:+ | gene-YDR462W_VR1 | rna-NM_001180770.1_VR1 | cds-NP_010750.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:379776-380219:+ | gene-YDR462W_ZTW1 | rna-NM_001180770.1_ZTW1 | cds-NP_010750.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1340171-1340614:+ | gene-YDR462W_Sparadoxus | rna-NM_001180770.1_Sparadoxus | cds-NP_010750.1_Sparadoxus | 89.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |