Gene name: MRN1
Reference locus (S288C): YPL184C
Gene biotype: protein_coding
Description: RNA-binding protein that may be involved in translational regulation; binds specific categories of mRNAs, including those that contain upstream open reading frames (uORFs) and internal ribosome entry sites (IRES); interacts genetically with chromatin remodelers and splicing factors, linking chromatin state, splicing and as a result mRNA maturation
Top 10 interactors (score): PUF2 (0.91); HEK2 (0.848); ASC1 (0.822); PUB1 (0.817); SDD4 (0.815); YBL081W (0.812); JSN1 (0.771); NSP1 (0.765); YBR016W (0.746); YLL032C (0.745); NRP1 (0.724); KSP1 (0.721); SCP160 (0.699); YBR238C (0.692); TIF4631 (0.692); WHI3 (0.69); SAP30 (0.676); PGD1 (0.671); ASM4 (0.669); PRP22 (0.652)
Homologues (species, bitscore): SPEN (Xenopus tropicalis, 50.4); Rox8 (Drosophila melanogaster, 59.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:173942-175792:- | gene-YPL184C_AKU4011 | rna-NM_001183998.1_AKU4011 | cds-NP_015140.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:379558-381402:- | gene-YPL184C_BG1 | rna-NM_001183998.1_BG1 | cds-NP_015140.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:199796-201640:- | gene-YPL184C_Bruggeman | rna-NM_001183998.1_Bruggeman | cds-NP_015140.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:196135-197979:- | gene-YPL184C_CAT1 | rna-NM_001183998.1_CAT1 | cds-NP_015140.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:178009-179859:- | gene-YPL184C_CBS1585 | rna-NM_001183998.1_CBS1585 | cds-NP_015140.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:192676-194514:- | gene-YPL184C_CBS436 | rna-NM_001183998.1_CBS436 | cds-NP_015140.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:182679-184529:- | gene-YPL184C_CBS6412 | rna-NM_001183998.1_CBS6412 | cds-NP_015140.1_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:174154-176010:- | gene-YPL184C_CBS6413 | rna-NM_001183998.1_CBS6413 | cds-NP_015140.1_CBS6413 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:195832-197670:- | gene-YPL184C_CENPK1137D | rna-NM_001183998.1_CENPK1137D | cds-NP_015140.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:172685-174535:- | gene-YPL184C_EthanolRed | rna-NM_001183998.1_EthanolRed | cds-NP_015140.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:180277-182127:- | gene-YPL184C_FaliES1 | rna-NM_001183998.1_FaliES1 | cds-NP_015140.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:183777-185621:+ | gene-YPL184C_JAY291 | rna-NM_001183998.1_JAY291 | cds-NP_015140.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:191171-193021:- | gene-YPL184C_MUCL30387 | rna-NM_001183998.1_MUCL30387 | cds-NP_015140.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:189191-191041:- | gene-YPL184C_MUCL30388 | rna-NM_001183998.1_MUCL30388 | cds-NP_015140.1_MUCL30388 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:171338-173188:- | gene-YPL184C_MUCL39482 | rna-NM_001183998.1_MUCL39482 | cds-NP_015140.1_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:228023-229867:- | gene-YPL184C_MUCL42920 | rna-NM_001183998.1_MUCL42920 | cds-NP_015140.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:195933-197771:- | gene-YPL184C_NCIM3186 | rna-NM_001183998.1_NCIM3186 | cds-NP_015140.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:177790-179640:- | gene-YPL184C_NCYC1407 | rna-NM_001183998.1_NCYC1407 | cds-NP_015140.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:185235-187079:- | gene-YPL184C_PE2H3 | rna-NM_001183998.1_PE2H3 | cds-NP_015140.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:184878-186722:- | gene-YPL184C_PE2H4 | rna-NM_001183998.1_PE2H4 | cds-NP_015140.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:195950-197788:- | gene-YPL184C_S288C | rna-NM_001183998.1_S288C | cds-NP_015140.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:175559-177403:+ | gene-YPL184C_SA1 | rna-NM_001183998.1_SA1 | cds-NP_015140.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:180075-181925:- | gene-YPL184C_ThermosaccDry | rna-NM_001183998.1_ThermosaccDry | cds-NP_015140.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:195008-196852:- | gene-YPL184C_VR1 | rna-NM_001183998.1_VR1 | cds-NP_015140.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:179405-181255:- | gene-YPL184C_ZTW1 | rna-NM_001183998.1_ZTW1 | cds-NP_015140.1_ZTW1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:181005-182855:- | gene-YPL184C_Sparadoxus | rna-NM_001183998.1_Sparadoxus | cds-NP_015140.1_Sparadoxus | 90.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |