Gene name: MRD1
Reference locus (S288C): YPR112C
Gene biotype: protein_coding
Description: Multiple RNA-binding domain-containing protein 1; Essential conserved small ribosomal subunit (40s) synthesis factor; component of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region
Top 10 interactors (score): UTP7 (0.999); NOP14 (0.999); NOP9 (0.999); ERB1 (0.999); UTP21 (0.999); NOC4 (0.999); PWP2 (0.999); KRI1 (0.999); TSR1 (0.999); ENP1 (0.999); RRP12 (0.999); NOC2 (0.999); UTP13 (0.999); BMS1 (0.999); BFR2 (0.999); RRP5 (0.999); ENP2 (0.999); DIP2 (0.999); KRE33 (0.999); ROK1 (0.999)
Homologues (species, bitscore): RBM19 (Homo sapiens, 389.8); Rbm19 (Mus musculus, 384.0); rbm19 (Danio rerio, 383.6); rbm19 (Xenopus tropicalis, 388.7); CG3335 (Drosophila melanogaster, 360.5); rbd-1 (Caenorhabditis elegans, 353.6); AT4G19610 (Arabidopsis thaliana, 384.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:721085-723748:- | gene-YPR112C_AKU4011 | rna-NM_001184209.1_AKU4011 | cds-NP_015437.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:174090-176753:+ | gene-YPR112C_BG1 | rna-NM_001184209.1_BG1 | cds-NP_015437.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:800197-802860:- | gene-YPR112C_Bruggeman | rna-NM_001184209.1_Bruggeman | cds-NP_015437.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:843398-846061:- | gene-YPR112C_CAT1 | rna-NM_001184209.1_CAT1 | cds-NP_015437.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:725342-728005:- | gene-YPR112C_CBS1585 | rna-NM_001184209.1_CBS1585 | cds-NP_015437.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:739641-742304:- | gene-YPR112C_CBS436 | rna-NM_001184209.1_CBS436 | cds-NP_015437.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:728065-730728:- | gene-YPR112C_CBS6412 | rna-NM_001184209.1_CBS6412 | cds-NP_015437.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:722789-725452:- | gene-YPR112C_CBS6413 | rna-NM_001184209.1_CBS6413 | cds-NP_015437.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:749241-751904:- | gene-YPR112C_CENPK1137D | rna-NM_001184209.1_CENPK1137D | cds-NP_015437.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1047699-1050362:- | gene-YPR112C_EthanolRed | rna-NM_001184209.1_EthanolRed | cds-NP_015437.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:727246-729909:- | gene-YPR112C_FaliES1 | rna-NM_001184209.1_FaliES1 | cds-NP_015437.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000436.1:18010-20673:- | gene-YPR112C_JAY291 | rna-NM_001184209.1_JAY291 | cds-NP_015437.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:740352-743015:- | gene-YPR112C_MUCL30387 | rna-NM_001184209.1_MUCL30387 | cds-NP_015437.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:739047-741710:- | gene-YPR112C_MUCL30388 | rna-NM_001184209.1_MUCL30388 | cds-NP_015437.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:717849-720512:- | gene-YPR112C_MUCL39482 | rna-NM_001184209.1_MUCL39482 | cds-NP_015437.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:781392-784055:- | gene-YPR112C_MUCL42920 | rna-NM_001184209.1_MUCL42920 | cds-NP_015437.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:749239-751902:- | gene-YPR112C_NCIM3186 | rna-NM_001184209.1_NCIM3186 | cds-NP_015437.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:726443-729106:- | gene-YPR112C_NCYC1407 | rna-NM_001184209.1_NCYC1407 | cds-NP_015437.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:732685-735348:- | gene-YPR112C_PE2H3 | rna-NM_001184209.1_PE2H3 | cds-NP_015437.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:732333-734996:- | gene-YPR112C_PE2H4 | rna-NM_001184209.1_PE2H4 | cds-NP_015437.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:749256-751919:- | gene-YPR112C_S288C | rna-NM_001184209.1_S288C | cds-NP_015437.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:47370-50033:- | gene-YPR112C_SA1 | rna-NM_001184209.1_SA1 | cds-NP_015437.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:726691-729354:- | gene-YPR112C_ThermosaccDry | rna-NM_001184209.1_ThermosaccDry | cds-NP_015437.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:743352-746015:- | gene-YPR112C_VR1 | rna-NM_001184209.1_VR1 | cds-NP_015437.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:725743-728406:- | gene-YPR112C_ZTW1 | rna-NM_001184209.1_ZTW1 | cds-NP_015437.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:726696-729359:- | gene-YPR112C_Sparadoxus | rna-NM_001184209.1_Sparadoxus | cds-NP_015437.1_Sparadoxus | 89.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |