Gene name: MMS2
Reference locus (S288C): YGL087C
Gene biotype: protein_coding
Description: Ubiquitin-conjugating enzyme variant; involved in error-free postreplication repair; forms a heteromeric complex with Ubc13p, an active ubiquitin-conjugating enzyme; cooperates with chromatin-associated RING finger proteins, Rad18p and Rad5p; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RAD5 (0.999); UBC13 (0.999); RAD6 (0.996); UBC9 (0.996); UBC1 (0.995); REV3 (0.995); UBI4 (0.995); RAD18 (0.991); UBC4 (0.986); UBC12 (0.98); UBC5 (0.98); RAD30 (0.978); REV1 (0.969); RPL40B (0.967); ACB1 (0.96); RAD52 (0.956); POL30 (0.949); RAD51 (0.948); RPS31 (0.946); SRS2 (0.942)
Homologues (species, bitscore): UBE2V2 (Homo sapiens, 155.2); Ube2v2 (Mus musculus, 152.9); ube2v2 (Danio rerio, 148.7); ube2v2 (Xenopus tropicalis, 150.6); Uev1A (Drosophila melanogaster, 143.3); uev-1 (Caenorhabditis elegans, 141.4); MMZ1 (Arabidopsis thaliana, 160.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:349410-349908:- | gene-YGL087C_AKU4011 | rna-NM_001180952.1_AKU4011 | cds-NP_011428.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:55508-56006:+ | gene-YGL087C_BG1 | rna-NM_001180952.1_BG1 | cds-NP_011428.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:351903-352401:- | gene-YGL087C_Bruggeman | rna-NM_001180952.1_Bruggeman | cds-NP_011428.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:348796-349294:- | gene-YGL087C_CAT1 | rna-NM_001180952.1_CAT1 | cds-NP_011428.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:352735-353233:- | gene-YGL087C_CBS1585 | rna-NM_001180952.1_CBS1585 | cds-NP_011428.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:347020-347518:- | gene-YGL087C_CBS436 | rna-NM_001180952.1_CBS436 | cds-NP_011428.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:337116-337614:- | gene-YGL087C_CBS6412 | rna-NM_001180952.1_CBS6412 | cds-NP_011428.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:347041-347539:- | gene-YGL087C_CBS6413 | rna-NM_001180952.1_CBS6413 | cds-NP_011428.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:346593-347091:- | gene-YGL087C_CENPK1137D | rna-NM_001180952.1_CENPK1137D | cds-NP_011428.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:338495-338993:- | gene-YGL087C_EthanolRed | rna-NM_001180952.1_EthanolRed | cds-NP_011428.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:341056-341554:- | gene-YGL087C_FaliES1 | rna-NM_001180952.1_FaliES1 | cds-NP_011428.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000369.1:26667-27165:- | gene-YGL087C_JAY291 | rna-NM_001180952.1_JAY291 | cds-NP_011428.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:348880-349378:- | gene-YGL087C_MUCL30387 | rna-NM_001180952.1_MUCL30387 | cds-NP_011428.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:351866-352364:- | gene-YGL087C_MUCL30388 | rna-NM_001180952.1_MUCL30388 | cds-NP_011428.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:349263-349761:- | gene-YGL087C_MUCL39482 | rna-NM_001180952.1_MUCL39482 | cds-NP_011428.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:353791-354289:- | gene-YGL087C_MUCL42920 | rna-NM_001180952.1_MUCL42920 | cds-NP_011428.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:346406-346904:- | gene-YGL087C_NCIM3186 | rna-NM_001180952.1_NCIM3186 | cds-NP_011428.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:340798-341296:- | gene-YGL087C_NCYC1407 | rna-NM_001180952.1_NCYC1407 | cds-NP_011428.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:342433-342931:- | gene-YGL087C_PE2H3 | rna-NM_001180952.1_PE2H3 | cds-NP_011428.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:347430-347928:- | gene-YGL087C_PE2H4 | rna-NM_001180952.1_PE2H4 | cds-NP_011428.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:346406-346904:- | gene-YGL087C_S288C | rna-NM_001180952.1_S288C | cds-NP_011428.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000089.1:23787-24285:- | gene-YGL087C_SA1 | rna-NM_001180952.1_SA1 | cds-NP_011428.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:341309-341807:- | gene-YGL087C_ThermosaccDry | rna-NM_001180952.1_ThermosaccDry | cds-NP_011428.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:451171-451669:- | gene-YGL087C_VR1 | rna-NM_001180952.1_VR1 | cds-NP_011428.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:338663-339161:- | gene-YGL087C_ZTW1 | rna-NM_001180952.1_ZTW1 | cds-NP_011428.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:344318-344803:- | gene-YGL087C_Sparadoxus | rna-NM_001180952.1_Sparadoxus | cds-NP_011428.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |