Gene name: MIP6
Reference locus (S288C): YHR015W
Gene biotype: protein_coding
Description: Putative RNA-binding protein; interacts with Mex67p, which is a component of the nuclear pore involved in nuclear mRNA export; MIP6 has a paralog, PES4, that arose from the whole genome duplication
Top 10 interactors (score): PBP1 (0.984); DHH1 (0.937); CDC33 (0.929); SUP35 (0.896); TIF4632 (0.854); TIF4631 (0.854); TIF2 (0.775); TIF1 (0.775); FAL1 (0.75); YER187W (0.75); YNR071C (0.75); SCD6 (0.747); YHR145C (0.746); SSP1 (0.735); HCA4 (0.715); YHR217C (0.713); YHR219W (0.711); MIX23 (0.698); YOL014W (0.698); OSW7 (0.694)
Homologues (species, bitscore): PABPC1 (Homo sapiens, 121.3); Pabpc1 (Mus musculus, 119.4); pabpc1a (Danio rerio, 115.2); pabpc1 (Xenopus tropicalis, 119.0); pAbp (Drosophila melanogaster, 102.8); pab-1 (Caenorhabditis elegans, 107.1); PAB2 (Arabidopsis thaliana, 118.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:123095-125074:+ | gene-YHR015W_AKU4011 | rna-NM_001179145.1_AKU4011 | cds-NP_011879.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:43006-44985:+ | gene-YHR015W_BG1 | rna-NM_001179145.1_BG1 | cds-NP_011879.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:129674-131653:+ | gene-YHR015W_Bruggeman | rna-NM_001179145.1_Bruggeman | cds-NP_011879.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:124262-126241:+ | gene-YHR015W_CAT1 | rna-NM_001179145.1_CAT1 | cds-NP_011879.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:123428-125407:+ | gene-YHR015W_CBS1585 | rna-NM_001179145.1_CBS1585 | cds-NP_011879.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:116765-118744:+ | gene-YHR015W_CBS436 | rna-NM_001179145.1_CBS436 | cds-NP_011879.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:123118-125097:+ | gene-YHR015W_CBS6412 | rna-NM_001179145.1_CBS6412 | cds-NP_011879.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:122761-124740:+ | gene-YHR015W_CBS6413 | rna-NM_001179145.1_CBS6413 | cds-NP_011879.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:127825-129804:+ | gene-YHR015W_CENPK1137D | rna-NM_001179145.1_CENPK1137D | cds-NP_011879.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:122641-124620:+ | gene-YHR015W_EthanolRed | rna-NM_001179145.1_EthanolRed | cds-NP_011879.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:123620-125599:+ | gene-YHR015W_FaliES1 | rna-NM_001179145.1_FaliES1 | cds-NP_011879.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000424.1:9827-11806:- | gene-YHR015W_JAY291 | rna-NM_001179145.1_JAY291 | cds-NP_011879.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:129681-131660:+ | gene-YHR015W_MUCL30387 | rna-NM_001179145.1_MUCL30387 | cds-NP_011879.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:130166-132145:+ | gene-YHR015W_MUCL30388 | rna-NM_001179145.1_MUCL30388 | cds-NP_011879.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:122455-124434:+ | gene-YHR015W_MUCL39482 | rna-NM_001179145.1_MUCL39482 | cds-NP_011879.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:127985-129964:+ | gene-YHR015W_MUCL42920 | rna-NM_001179145.1_MUCL42920 | cds-NP_011879.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:134436-136415:+ | gene-YHR015W_NCIM3186 | rna-NM_001179145.1_NCIM3186 | cds-NP_011879.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:121869-123848:+ | gene-YHR015W_NCYC1407 | rna-NM_001179145.1_NCYC1407 | cds-NP_011879.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:124435-126414:+ | gene-YHR015W_PE2H3 | rna-NM_001179145.1_PE2H3 | cds-NP_011879.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:131876-133855:+ | gene-YHR015W_PE2H4 | rna-NM_001179145.1_PE2H4 | cds-NP_011879.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:134554-136533:+ | gene-YHR015W_S288C | rna-NM_001179145.1_S288C | cds-NP_011879.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000075.1:9975-11954:- | gene-YHR015W_SA1 | rna-NM_001179145.1_SA1 | cds-NP_011879.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:124709-126688:+ | gene-YHR015W_ThermosaccDry | rna-NM_001179145.1_ThermosaccDry | cds-NP_011879.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:130507-132486:+ | gene-YHR015W_VR1 | rna-NM_001179145.1_VR1 | cds-NP_011879.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:115947-117926:+ | gene-YHR015W_ZTW1 | rna-NM_001179145.1_ZTW1 | cds-NP_011879.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:122777-124756:+ | gene-YHR015W_Sparadoxus | rna-NM_001179145.1_Sparadoxus | cds-NP_011879.1_Sparadoxus | 88.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |