Gene name: MET28
Reference locus (S288C): YIR017C
Gene biotype: protein_coding
Description: bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex; participates in the regulation of sulfur metabolism
Top 10 interactors (score): CBF1 (0.999); MET4 (0.999); MET31 (0.966); MET16 (0.955); STR3 (0.951); MET32 (0.946); MET2 (0.945); MET17 (0.885); MET1 (0.877); MET14 (0.848); MET3 (0.845); SUL2 (0.83); MET8 (0.793); MET30 (0.788); GSH1 (0.78); MET10 (0.771); YAP5 (0.71); DAL80 (0.709); GCN4 (0.697); CYS3 (0.673)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:382899-383462:- | gene-YIR017C_AKU4011 | rna-NM_001179539.3_AKU4011 | cds-NP_012282.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000072.1:43107-43670:+ | gene-YIR017C_BG1 | rna-NM_001179539.3_BG1 | cds-NP_012282.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:387217-387780:- | gene-YIR017C_Bruggeman | rna-NM_001179539.3_Bruggeman | cds-NP_012282.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:373934-374497:- | gene-YIR017C_CAT1 | rna-NM_001179539.3_CAT1 | cds-NP_012282.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:382928-383491:- | gene-YIR017C_CBS1585 | rna-NM_001179539.3_CBS1585 | cds-NP_012282.3_CBS1585 | 99.6 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:375498-376061:- | gene-YIR017C_CBS436 | rna-NM_001179539.3_CBS436 | cds-NP_012282.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:378417-378980:- | gene-YIR017C_CBS6412 | rna-NM_001179539.3_CBS6412 | cds-NP_012282.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:375009-375572:- | gene-YIR017C_CBS6413 | rna-NM_001179539.3_CBS6413 | cds-NP_012282.3_CBS6413 | 99.6 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:375611-376174:- | gene-YIR017C_CENPK1137D | rna-NM_001179539.3_CENPK1137D | cds-NP_012282.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:365981-366544:- | gene-YIR017C_EthanolRed | rna-NM_001179539.3_EthanolRed | cds-NP_012282.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:384707-385270:- | gene-YIR017C_FaliES1 | rna-NM_001179539.3_FaliES1 | cds-NP_012282.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000009.1:6793-7356:+ | gene-YIR017C_JAY291 | rna-NM_001179539.3_JAY291 | cds-NP_012282.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:384711-385274:- | gene-YIR017C_MUCL30387 | rna-NM_001179539.3_MUCL30387 | cds-NP_012282.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:381490-382053:- | gene-YIR017C_MUCL30388 | rna-NM_001179539.3_MUCL30388 | cds-NP_012282.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:383568-384131:- | gene-YIR017C_MUCL39482 | rna-NM_001179539.3_MUCL39482 | cds-NP_012282.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:387131-387694:- | gene-YIR017C_MUCL42920 | rna-NM_001179539.3_MUCL42920 | cds-NP_012282.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:383556-384119:- | gene-YIR017C_NCIM3186 | rna-NM_001179539.3_NCIM3186 | cds-NP_012282.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:387791-388354:- | gene-YIR017C_NCYC1407 | rna-NM_001179539.3_NCYC1407 | cds-NP_012282.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:377516-378079:- | gene-YIR017C_PE2H3 | rna-NM_001179539.3_PE2H3 | cds-NP_012282.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:372222-372785:- | gene-YIR017C_PE2H4 | rna-NM_001179539.3_PE2H4 | cds-NP_012282.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:383556-384119:- | gene-YIR017C_S288C | rna-NM_001179539.3_S288C | cds-NP_012282.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000066.1:58412-58975:- | gene-YIR017C_SA1 | rna-NM_001179539.3_SA1 | cds-NP_012282.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:382312-382875:- | gene-YIR017C_ThermosaccDry | rna-NM_001179539.3_ThermosaccDry | cds-NP_012282.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:378398-378961:- | gene-YIR017C_VR1 | rna-NM_001179539.3_VR1 | cds-NP_012282.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:356312-356875:- | gene-YIR017C_ZTW1 | rna-NM_001179539.3_ZTW1 | cds-NP_012282.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:377655-378220:- | gene-YIR017C_Sparadoxus | rna-NM_001179539.3_Sparadoxus | cds-NP_012282.3_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |