Gene name: MED11
Reference locus (S288C): YMR112C
Gene biotype: protein_coding
Description: Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential protein
Top 10 interactors (score): MED6 (0.999); MED8 (0.999); SRB2 (0.999); MED7 (0.999); SRB5 (0.999); NUT2 (0.999); SRB6 (0.999); SRB4 (0.999); CSE2 (0.998); RGR1 (0.996); SRB7 (0.996); MED4 (0.994); SOH1 (0.993); ROX3 (0.993); MED2 (0.988); TAF14 (0.974); SPT15 (0.973); GAL11 (0.964); RPB7 (0.961); RPB4 (0.96)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:532274-532669:- | gene-YMR112C_AKU4011 | rna-NM_001182612.1_AKU4011 | cds-NP_013830.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:10180-10575:+ | gene-YMR112C_BG1 | rna-NM_001182612.1_BG1 | cds-NP_013830.1_BG1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:474459-474854:- | gene-YMR112C_Bruggeman | rna-NM_001182612.1_Bruggeman | cds-NP_013830.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:474764-475159:- | gene-YMR112C_CAT1 | rna-NM_001182612.1_CAT1 | cds-NP_013830.1_CAT1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:465717-466112:- | gene-YMR112C_CBS1585 | rna-NM_001182612.1_CBS1585 | cds-NP_013830.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:470632-471027:- | gene-YMR112C_CBS436 | rna-NM_001182612.1_CBS436 | cds-NP_013830.1_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:578325-578720:- | gene-YMR112C_CBS6412 | rna-NM_001182612.1_CBS6412 | cds-NP_013830.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:464478-464873:- | gene-YMR112C_CBS6413 | rna-NM_001182612.1_CBS6413 | cds-NP_013830.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:488626-489021:- | gene-YMR112C_CENPK1137D | rna-NM_001182612.1_CENPK1137D | cds-NP_013830.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:465093-465459:- | gene-YMR112C_EthanolRed | rna-NM_001182612.1_EthanolRed | cds-NP_013830.1_EthanolRed | 86.8 | 90.9 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:469103-469498:- | gene-YMR112C_FaliES1 | rna-NM_001182612.1_FaliES1 | cds-NP_013830.1_FaliES1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000380.1:10059-10454:+ | gene-YMR112C_JAY291 | rna-NM_001182612.1_JAY291 | cds-NP_013830.1_JAY291 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:471380-471775:- | gene-YMR112C_MUCL30387 | rna-NM_001182612.1_MUCL30387 | cds-NP_013830.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:475381-475776:- | gene-YMR112C_MUCL30388 | rna-NM_001182612.1_MUCL30388 | cds-NP_013830.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:465518-465913:- | gene-YMR112C_MUCL39482 | rna-NM_001182612.1_MUCL39482 | cds-NP_013830.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:472284-472679:- | gene-YMR112C_MUCL42920 | rna-NM_001182612.1_MUCL42920 | cds-NP_013830.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:494054-494449:- | gene-YMR112C_NCIM3186 | rna-NM_001182612.1_NCIM3186 | cds-NP_013830.1_NCIM3186 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:465414-465809:- | gene-YMR112C_NCYC1407 | rna-NM_001182612.1_NCYC1407 | cds-NP_013830.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:471229-471624:- | gene-YMR112C_PE2H3 | rna-NM_001182612.1_PE2H3 | cds-NP_013830.1_PE2H3 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:477324-477719:- | gene-YMR112C_PE2H4 | rna-NM_001182612.1_PE2H4 | cds-NP_013830.1_PE2H4 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:494100-494495:- | gene-YMR112C_S288C | rna-NM_001182612.1_S288C | cds-NP_013830.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:77111-77506:+ | gene-YMR112C_SA1 | rna-NM_001182612.1_SA1 | cds-NP_013830.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:466079-466474:- | gene-YMR112C_ThermosaccDry | rna-NM_001182612.1_ThermosaccDry | cds-NP_013830.1_ThermosaccDry | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:477815-478210:- | gene-YMR112C_VR1 | rna-NM_001182612.1_VR1 | cds-NP_013830.1_VR1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:442124-442519:- | gene-YMR112C_ZTW1 | rna-NM_001182612.1_ZTW1 | cds-NP_013830.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:479129-479524:- | gene-YMR112C_Sparadoxus | rna-NM_001182612.1_Sparadoxus | cds-NP_013830.1_Sparadoxus | 89.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |