Gene name: MDH3
Reference locus (S288C): YDL078C
Gene biotype: protein_coding
Description: Peroxisomal malate dehydrogenase; catalyzes interconversion of malate and oxaloacetate; involved in the glyoxylate cycle
Top 10 interactors (score): FUM1 (0.997); CIT2 (0.996); CIT3 (0.993); CIT1 (0.992); IDH2 (0.987); MAE1 (0.987); AAT1 (0.986); MLS1 (0.985); PYC2 (0.981); LSC1 (0.98); PCK1 (0.978); ACO1 (0.974); DAL7 (0.97); PYC1 (0.965); AAT2 (0.959); ATP3 (0.95); ATP1 (0.945); ATP2 (0.938); IDH1 (0.932); GDH2 (0.928)
Homologues (species, bitscore): MDH2 (Homo sapiens, 251.9); Mdh2 (Mus musculus, 249.6); mdh2 (Danio rerio, 256.9); mdh2 (Xenopus tropicalis, 259.6); Mdh2 (Drosophila melanogaster, 257.3); mdh-2 (Caenorhabditis elegans, 253.1); MDH (Arabidopsis thaliana, 245.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:299955-300986:- | gene-YDL078C_AKU4011 | rna-NM_001180137.1_AKU4011 | cds-NP_010205.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:248942-249973:+ | gene-YDL078C_BG1 | rna-NM_001180137.1_BG1 | cds-NP_010205.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:317639-318670:- | gene-YDL078C_Bruggeman | rna-NM_001180137.1_Bruggeman | cds-NP_010205.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:314130-315161:- | gene-YDL078C_CAT1 | rna-NM_001180137.1_CAT1 | cds-NP_010205.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:298227-299258:- | gene-YDL078C_CBS1585 | rna-NM_001180137.1_CBS1585 | cds-NP_010205.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:314908-315939:- | gene-YDL078C_CBS436 | rna-NM_001180137.1_CBS436 | cds-NP_010205.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:296654-297685:- | gene-YDL078C_CBS6412 | rna-NM_001180137.1_CBS6412 | cds-NP_010205.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:316280-317311:- | gene-YDL078C_CBS6413 | rna-NM_001180137.1_CBS6413 | cds-NP_010205.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:314180-315211:- | gene-YDL078C_CENPK1137D | rna-NM_001180137.1_CENPK1137D | cds-NP_010205.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:310992-312023:- | gene-YDL078C_EthanolRed | rna-NM_001180137.1_EthanolRed | cds-NP_010205.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:316964-317995:- | gene-YDL078C_FaliES1 | rna-NM_001180137.1_FaliES1 | cds-NP_010205.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:87033-88064:- | gene-YDL078C_JAY291 | rna-NM_001180137.1_JAY291 | cds-NP_010205.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:315155-316186:- | gene-YDL078C_MUCL30387 | rna-NM_001180137.1_MUCL30387 | cds-NP_010205.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:306182-307213:- | gene-YDL078C_MUCL30388 | rna-NM_001180137.1_MUCL30388 | cds-NP_010205.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:299332-300363:- | gene-YDL078C_MUCL39482 | rna-NM_001180137.1_MUCL39482 | cds-NP_010205.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:221342-222373:- | gene-YDL078C_MUCL42920 | rna-NM_001180137.1_MUCL42920 | cds-NP_010205.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:315280-316311:- | gene-YDL078C_NCIM3186 | rna-NM_001180137.1_NCIM3186 | cds-NP_010205.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:299346-300377:- | gene-YDL078C_NCYC1407 | rna-NM_001180137.1_NCYC1407 | cds-NP_010205.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:306151-307182:- | gene-YDL078C_PE2H3 | rna-NM_001180137.1_PE2H3 | cds-NP_010205.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:306130-307161:- | gene-YDL078C_PE2H4 | rna-NM_001180137.1_PE2H4 | cds-NP_010205.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:315357-316388:- | gene-YDL078C_S288C | rna-NM_001180137.1_S288C | cds-NP_010205.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:118533-119564:+ | gene-YDL078C_SA1 | rna-NM_001180137.1_SA1 | cds-NP_010205.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:316475-317506:- | gene-YDL078C_ThermosaccDry | rna-NM_001180137.1_ThermosaccDry | cds-NP_010205.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:318549-319580:- | gene-YDL078C_VR1 | rna-NM_001180137.1_VR1 | cds-NP_010205.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:314391-315422:- | gene-YDL078C_ZTW1 | rna-NM_001180137.1_ZTW1 | cds-NP_010205.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:316528-317559:- | gene-YDL078C_Sparadoxus | rna-NM_001180137.1_Sparadoxus | cds-NP_010205.1_Sparadoxus | 91.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |