Gene name: MCM1
Reference locus (S288C): YMR043W
Gene biotype: protein_coding
Description: Transcription factor; involved in cell-type-specific transcription and pheromone response; plays a central role in the formation of both repressor and activator complexes; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): FKH2 (0.999); YOX1 (0.999); STE12 (0.998); HMLALPHA2 (0.997); FKH1 (0.994); YHP1 (0.994); ARG81 (0.994); MATALPHA2 (0.993); NDD1 (0.992); ARG82 (0.986); SWI4 (0.975); SWI5 (0.972); CYC8 (0.965); SWI6 (0.963); MBP1 (0.963); HMLALPHA1 (0.957); MSN2 (0.934); CLB2 (0.928); MSN4 (0.916); BCK2 (0.901)
Homologues (species, bitscore): SRF (Homo sapiens, 124.8); Srf (Mus musculus, 124.0); srfb (Danio rerio, 125.9); srf (Xenopus tropicalis, 125.2); bs (Drosophila melanogaster, 127.1); unc-120 (Caenorhabditis elegans, 124.4); MAF4 (Arabidopsis thaliana, 72.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:403471-404325:+ | gene-YMR043W_AKU4011 | rna-NM_001182540.1_AKU4011 | cds-NP_013757.1_AKU4011 | 99.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:138464-139324:- | gene-YMR043W_BG1 | rna-NM_001182540.1_BG1 | cds-NP_013757.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:343408-344268:+ | gene-YMR043W_Bruggeman | rna-NM_001182540.1_Bruggeman | cds-NP_013757.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:345934-346809:+ | gene-YMR043W_CAT1 | rna-NM_001182540.1_CAT1 | cds-NP_013757.1_CAT1 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:336413-337267:+ | gene-YMR043W_CBS1585 | rna-NM_001182540.1_CBS1585 | cds-NP_013757.1_CBS1585 | 99.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:341953-342813:+ | gene-YMR043W_CBS436 | rna-NM_001182540.1_CBS436 | cds-NP_013757.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:449814-450668:+ | gene-YMR043W_CBS6412 | rna-NM_001182540.1_CBS6412 | cds-NP_013757.1_CBS6412 | 99.0 | 99.3 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:335668-336522:+ | gene-YMR043W_CBS6413 | rna-NM_001182540.1_CBS6413 | cds-NP_013757.1_CBS6413 | 99.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:348589-349461:+ | gene-YMR043W_CENPK1137D | rna-NM_001182540.1_CENPK1137D | cds-NP_013757.1_CENPK1137D | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:336244-337101:+ | gene-YMR043W_EthanolRed | rna-NM_001182540.1_EthanolRed | cds-NP_013757.1_EthanolRed | 98.7 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:339426-340280:+ | gene-YMR043W_FaliES1 | rna-NM_001182540.1_FaliES1 | cds-NP_013757.1_FaliES1 | 99.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:96665-97525:- | gene-YMR043W_JAY291 | rna-NM_001182540.1_JAY291 | cds-NP_013757.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:341367-342227:+ | gene-YMR043W_MUCL30387 | rna-NM_001182540.1_MUCL30387 | cds-NP_013757.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:346022-346882:+ | gene-YMR043W_MUCL30388 | rna-NM_001182540.1_MUCL30388 | cds-NP_013757.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:336695-337555:+ | gene-YMR043W_MUCL39482 | rna-NM_001182540.1_MUCL39482 | cds-NP_013757.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:342510-343370:+ | gene-YMR043W_MUCL42920 | rna-NM_001182540.1_MUCL42920 | cds-NP_013757.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:353825-354685:+ | gene-YMR043W_NCIM3186 | rna-NM_001182540.1_NCIM3186 | cds-NP_013757.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:336612-337466:+ | gene-YMR043W_NCYC1407 | rna-NM_001182540.1_NCYC1407 | cds-NP_013757.1_NCYC1407 | 99.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:342550-343410:+ | gene-YMR043W_PE2H3 | rna-NM_001182540.1_PE2H3 | cds-NP_013757.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:348645-349505:+ | gene-YMR043W_PE2H4 | rna-NM_001182540.1_PE2H4 | cds-NP_013757.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:353871-354731:+ | gene-YMR043W_S288C | rna-NM_001182540.1_S288C | cds-NP_013757.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:183528-184388:- | gene-YMR043W_SA1 | rna-NM_001182540.1_SA1 | cds-NP_013757.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:336495-337352:+ | gene-YMR043W_ThermosaccDry | rna-NM_001182540.1_ThermosaccDry | cds-NP_013757.1_ThermosaccDry | 98.8 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:341198-342058:+ | gene-YMR043W_VR1 | rna-NM_001182540.1_VR1 | cds-NP_013757.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:315503-316357:+ | gene-YMR043W_ZTW1 | rna-NM_001182540.1_ZTW1 | cds-NP_013757.1_ZTW1 | 98.9 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:349418-350257:+ | gene-YMR043W_Sparadoxus | rna-NM_001182540.1_Sparadoxus | cds-NP_013757.1_Sparadoxus | 89.9 | 97.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |