Gene name: MAK5
Reference locus (S288C): YBR142W
Gene biotype: protein_coding
Description: Essential nucleolar protein; putative DEAD-box RNA helicase required for maintenance of M1 dsRNA virus; involved in biogenesis of large (60S) ribosomal subunits; Belongs to the DEAD box helicase family. DDX24/MAK5 subfamily
Top 10 interactors (score): NOP4 (0.999); NOP14 (0.999); NOC2 (0.999); EBP2 (0.999); ERB1 (0.999); DRS1 (0.999); HAS1 (0.999); NOP2 (0.999); BRX1 (0.999); NOP15 (0.998); RPF1 (0.998); KRI1 (0.998); PUF6 (0.998); DBP9 (0.998); DBP10 (0.998); YTM1 (0.998); ECM16 (0.998); NOC3 (0.998); UTP14 (0.997); MAK21 (0.997)
Homologues (species, bitscore): DDX24 (Homo sapiens, 259.6); Ddx24 (Mus musculus, 254.2); LOC553462 (Danio rerio, 273.1); ddx24 (Xenopus tropicalis, 284.3); CG9143 (Drosophila melanogaster, 306.6); F55F8.2 (Caenorhabditis elegans, 259.6); AT3G16840 (Arabidopsis thaliana, 263.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:511203-513524:+ | gene-YBR142W_AKU4011 | rna-NM_001178490.1_AKU4011 | cds-NP_009700.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:501774-504095:+ | gene-YBR142W_BG1 | rna-NM_001178490.1_BG1 | cds-NP_009700.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:513006-515315:+ | gene-YBR142W_Bruggeman | rna-NM_001178490.1_Bruggeman | cds-NP_009700.1_Bruggeman | 98.6 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:408348-410669:+ | gene-YBR142W_CAT1 | rna-NM_001178490.1_CAT1 | cds-NP_009700.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:502983-505304:+ | gene-YBR142W_CBS1585 | rna-NM_001178490.1_CBS1585 | cds-NP_009700.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:511097-513406:+ | gene-YBR142W_CBS436 | rna-NM_001178490.1_CBS436 | cds-NP_009700.1_CBS436 | 98.6 | 99.4 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:600849-603170:+ | gene-YBR142W_CBS6412 | rna-NM_001178490.1_CBS6412 | cds-NP_009700.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:508618-510939:+ | gene-YBR142W_CBS6413 | rna-NM_001178490.1_CBS6413 | cds-NP_009700.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:522086-524407:+ | gene-YBR142W_CENPK1137D | rna-NM_001178490.1_CENPK1137D | cds-NP_009700.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:637225-639546:+ | gene-YBR142W_EthanolRed | rna-NM_001178490.1_EthanolRed | cds-NP_009700.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:527237-529558:+ | gene-YBR142W_FaliES1 | rna-NM_001178490.1_FaliES1 | cds-NP_009700.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000444.1:50698-53007:+ | gene-YBR142W_JAY291 | rna-NM_001178490.1_JAY291 | cds-NP_009700.1_JAY291 | 98.7 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:515880-518189:+ | gene-YBR142W_MUCL30387 | rna-NM_001178490.1_MUCL30387 | cds-NP_009700.1_MUCL30387 | 98.6 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:515170-517479:+ | gene-YBR142W_MUCL30388 | rna-NM_001178490.1_MUCL30388 | cds-NP_009700.1_MUCL30388 | 98.6 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:501370-503691:+ | gene-YBR142W_MUCL39482 | rna-NM_001178490.1_MUCL39482 | cds-NP_009700.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:511273-513582:+ | gene-YBR142W_MUCL42920 | rna-NM_001178490.1_MUCL42920 | cds-NP_009700.1_MUCL42920 | 98.7 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:528114-530435:+ | gene-YBR142W_NCIM3186 | rna-NM_001178490.1_NCIM3186 | cds-NP_009700.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:503909-506230:+ | gene-YBR142W_NCYC1407 | rna-NM_001178490.1_NCYC1407 | cds-NP_009700.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:516544-518853:+ | gene-YBR142W_PE2H3 | rna-NM_001178490.1_PE2H3 | cds-NP_009700.1_PE2H3 | 98.7 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:514220-516529:+ | gene-YBR142W_PE2H4 | rna-NM_001178490.1_PE2H4 | cds-NP_009700.1_PE2H4 | 98.7 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:528317-530638:+ | gene-YBR142W_S288C | rna-NM_001178490.1_S288C | cds-NP_009700.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:49500-51821:+ | gene-YBR142W_SA1 | rna-NM_001178490.1_SA1 | cds-NP_009700.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:526250-528571:+ | gene-YBR142W_ThermosaccDry | rna-NM_001178490.1_ThermosaccDry | cds-NP_009700.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:507749-510070:+ | gene-YBR142W_VR1 | rna-NM_001178490.1_VR1 | cds-NP_009700.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:501396-503717:+ | gene-YBR142W_ZTW1 | rna-NM_001178490.1_ZTW1 | cds-NP_009700.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:538636-540945:+ | gene-YBR142W_Sparadoxus | rna-NM_001178490.1_Sparadoxus | cds-NP_009700.1_Sparadoxus | 88.8 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |