Gene name: MAK16
Reference locus (S288C): YAL025C
Gene biotype: protein_coding
Description: Ribosome biosynthesis protein mak16; Essential nuclear protein; constituent of 66S pre-ribosomal particles; required for maturation of 25S and 5.8S rRNAs; required for maintenance of M1 satellite double-stranded RNA of the L-A virus
Top 10 interactors (score): RRP15 (0.999); DBP10 (0.999); RLP7 (0.999); RRP14 (0.999); CIC1 (0.999); NOG1 (0.999); NOP4 (0.999); NOC2 (0.999); BRX1 (0.999); NSA1 (0.999); ERB1 (0.999); EBP2 (0.999); SSF1 (0.999); NUG1 (0.999); NIP7 (0.999); NOP7 (0.999); MRT4 (0.999); CGR1 (0.999); NOC3 (0.999); PUF6 (0.999)
Homologues (species, bitscore): MAK16 (Homo sapiens, 258.5); Mak16 (Mus musculus, 261.2); mak16 (Danio rerio, 272.7); mak16 (Xenopus tropicalis, 270.4); Rbm13 (Drosophila melanogaster, 244.6); C16A3.6 (Caenorhabditis elegans, 219.2); AT1G23280 (Arabidopsis thaliana, 241.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:85350-86270:- | gene-YAL025C_AKU4011 | rna-NM_001178170.2_AKU4011 | cds-NP_009377.2_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:72477-73397:- | gene-YAL025C_BG1 | rna-NM_001178170.2_BG1 | cds-NP_009377.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:100229-101149:- | gene-YAL025C_Bruggeman | rna-NM_001178170.2_Bruggeman | cds-NP_009377.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:86577-87497:- | gene-YAL025C_CAT1 | rna-NM_001178170.2_CAT1 | cds-NP_009377.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:98369-99289:- | gene-YAL025C_CBS1585 | rna-NM_001178170.2_CBS1585 | cds-NP_009377.2_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:98617-99537:- | gene-YAL025C_CBS436 | rna-NM_001178170.2_CBS436 | cds-NP_009377.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005327.1:84513-85433:- | gene-YAL025C_CBS6412 | rna-NM_001178170.2_CBS6412 | cds-NP_009377.2_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:96632-97552:- | gene-YAL025C_CBS6413 | rna-NM_001178170.2_CBS6413 | cds-NP_009377.2_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:100315-101235:- | gene-YAL025C_CENPK1137D | rna-NM_001178170.2_CENPK1137D | cds-NP_009377.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:86772-87692:- | gene-YAL025C_EthanolRed | rna-NM_001178170.2_EthanolRed | cds-NP_009377.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:101396-102316:- | gene-YAL025C_FaliES1 | rna-NM_001178170.2_FaliES1 | cds-NP_009377.2_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:72665-73585:- | gene-YAL025C_JAY291 | rna-NM_001178170.2_JAY291 | cds-NP_009377.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:101321-102241:- | gene-YAL025C_MUCL30387 | rna-NM_001178170.2_MUCL30387 | cds-NP_009377.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:97868-98788:- | gene-YAL025C_MUCL30388 | rna-NM_001178170.2_MUCL30388 | cds-NP_009377.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:97154-98074:- | gene-YAL025C_MUCL39482 | rna-NM_001178170.2_MUCL39482 | cds-NP_009377.2_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:99526-100446:- | gene-YAL025C_MUCL42920 | rna-NM_001178170.2_MUCL42920 | cds-NP_009377.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:100102-101022:- | gene-YAL025C_NCIM3186 | rna-NM_001178170.2_NCIM3186 | cds-NP_009377.2_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:85032-85952:- | gene-YAL025C_NCYC1407 | rna-NM_001178170.2_NCYC1407 | cds-NP_009377.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:86943-87863:- | gene-YAL025C_PE2H3 | rna-NM_001178170.2_PE2H3 | cds-NP_009377.2_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:86662-87582:- | gene-YAL025C_PE2H4 | rna-NM_001178170.2_PE2H4 | cds-NP_009377.2_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:100225-101145:- | gene-YAL025C_S288C | rna-NM_001178170.2_S288C | cds-NP_009377.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000059.1:29347-30267:- | gene-YAL025C_SA1 | rna-NM_001178170.2_SA1 | cds-NP_009377.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:100913-101833:- | gene-YAL025C_ThermosaccDry | rna-NM_001178170.2_ThermosaccDry | cds-NP_009377.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:102193-103113:- | gene-YAL025C_VR1 | rna-NM_001178170.2_VR1 | cds-NP_009377.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:72728-73648:- | gene-YAL025C_ZTW1 | rna-NM_001178170.2_ZTW1 | cds-NP_009377.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:90337-91257:- | gene-YAL025C_Sparadoxus | rna-NM_001178170.2_Sparadoxus | cds-NP_009377.2_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |