Gene name: LTV1
Reference locus (S288C): YKL143W
Gene biotype: protein_coding
Description: Protein LTV1; Component of the GSE complex; GSE is required for proper sorting of amino acid permease Gap1p; required for ribosomal small subunit export from nucleus; required for growth at low temperature; Belongs to the LTV1 family
Top 10 interactors (score): EBP2 (0.999); ENP1 (0.999); TSR1 (0.999); RPS3 (0.999); PNO1 (0.999); RIO2 (0.999); NOB1 (0.999); NOP14 (0.998); KRR1 (0.998); NMD3 (0.997); RRP12 (0.996); RPS15 (0.996); NOP7 (0.995); DRS1 (0.995); SDA1 (0.995); HCA4 (0.994); SAS10 (0.994); UTP11 (0.994); BMS1 (0.993); RPS20 (0.993)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:163659-165050:+ | gene-YKL143W_AKU4011 | rna-NM_001179709.1_AKU4011 | cds-NP_012779.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:140791-142182:+ | gene-YKL143W_BG1 | rna-NM_001179709.1_BG1 | cds-NP_012779.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:181320-182711:+ | gene-YKL143W_Bruggeman | rna-NM_001179709.1_Bruggeman | cds-NP_012779.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:176645-178036:+ | gene-YKL143W_CAT1 | rna-NM_001179709.1_CAT1 | cds-NP_012779.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:175890-177281:+ | gene-YKL143W_CBS1585 | rna-NM_001179709.1_CBS1585 | cds-NP_012779.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:174490-175881:+ | gene-YKL143W_CBS436 | rna-NM_001179709.1_CBS436 | cds-NP_012779.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:160904-162295:+ | gene-YKL143W_CBS6412 | rna-NM_001179709.1_CBS6412 | cds-NP_012779.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:176354-177745:+ | gene-YKL143W_CBS6413 | rna-NM_001179709.1_CBS6413 | cds-NP_012779.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:176425-177816:+ | gene-YKL143W_CENPK1137D | rna-NM_001179709.1_CENPK1137D | cds-NP_012779.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:174393-175784:+ | gene-YKL143W_EthanolRed | rna-NM_001179709.1_EthanolRed | cds-NP_012779.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:175205-176596:+ | gene-YKL143W_FaliES1 | rna-NM_001179709.1_FaliES1 | cds-NP_012779.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000198.1:11918-13309:+ | gene-YKL143W_JAY291 | rna-NM_001179709.1_JAY291 | cds-NP_012779.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:183417-184808:+ | gene-YKL143W_MUCL30387 | rna-NM_001179709.1_MUCL30387 | cds-NP_012779.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:177769-179160:+ | gene-YKL143W_MUCL30388 | rna-NM_001179709.1_MUCL30388 | cds-NP_012779.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:175691-177082:+ | gene-YKL143W_MUCL39482 | rna-NM_001179709.1_MUCL39482 | cds-NP_012779.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:180080-181471:+ | gene-YKL143W_MUCL42920 | rna-NM_001179709.1_MUCL42920 | cds-NP_012779.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:176770-178161:+ | gene-YKL143W_NCIM3186 | rna-NM_001179709.1_NCIM3186 | cds-NP_012779.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:175881-177272:+ | gene-YKL143W_NCYC1407 | rna-NM_001179709.1_NCYC1407 | cds-NP_012779.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:182978-184369:+ | gene-YKL143W_PE2H3 | rna-NM_001179709.1_PE2H3 | cds-NP_012779.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:179272-180663:+ | gene-YKL143W_PE2H4 | rna-NM_001179709.1_PE2H4 | cds-NP_012779.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:176781-178172:+ | gene-YKL143W_S288C | rna-NM_001179709.1_S288C | cds-NP_012779.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:93203-94594:+ | gene-YKL143W_SA1 | rna-NM_001179709.1_SA1 | cds-NP_012779.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:175905-177296:+ | gene-YKL143W_ThermosaccDry | rna-NM_001179709.1_ThermosaccDry | cds-NP_012779.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:175256-176647:+ | gene-YKL143W_VR1 | rna-NM_001179709.1_VR1 | cds-NP_012779.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:174438-175828:+ | gene-YKL143W_ZTW1 | rna-NM_001179709.1_ZTW1 | cds-NP_012779.1_ZTW1 | 99.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:191130-192521:+ | gene-YKL143W_Sparadoxus | rna-NM_001179709.1_Sparadoxus | cds-NP_012779.1_Sparadoxus | 89.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |