Gene name: LTP1
Reference locus (S288C): YPR073C
Gene biotype: protein_coding
Description: Low molecular weight phosphotyrosine protein phosphatase; Protein phosphotyrosine phosphatase of unknown cellular role; activated by adenine
Top 10 interactors (score): FAD1 (0.909); THI6 (0.904); RIB5 (0.902); THI80 (0.901); PHO8 (0.83); FMN1 (0.817); PHO11 (0.8); PHO5 (0.8); DIA3 (0.8); PHO3 (0.8); PHO12 (0.8); GIP3 (0.75); TYW3 (0.749); SLM3 (0.713); THI21 (0.65); THI20 (0.65); HMS1 (0.646); GRX4 (0.626); RAD14 (0.622); ARR3 (0.62)
Homologues (species, bitscore): ACP1 (Homo sapiens, 129.8); Acp1 (Mus musculus, 125.9); acp1 (Danio rerio, 122.1); acp1 (Xenopus tropicalis, 132.1); primo-1 (Drosophila melanogaster, 125.2); Y94H6A.7 (Caenorhabditis elegans, 85.9); AT3G44620 (Arabidopsis thaliana, 89.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:663604-664089:- | gene-YPR073C_AKU4011 | rna-NM_001184170.1_AKU4011 | cds-NP_015398.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:233595-234080:+ | gene-YPR073C_BG1 | rna-NM_001184170.1_BG1 | cds-NP_015398.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:741280-741765:- | gene-YPR073C_Bruggeman | rna-NM_001184170.1_Bruggeman | cds-NP_015398.1_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:785596-786081:- | gene-YPR073C_CAT1 | rna-NM_001184170.1_CAT1 | cds-NP_015398.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:667294-667779:- | gene-YPR073C_CBS1585 | rna-NM_001184170.1_CBS1585 | cds-NP_015398.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:681669-682154:- | gene-YPR073C_CBS436 | rna-NM_001184170.1_CBS436 | cds-NP_015398.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:671041-671526:- | gene-YPR073C_CBS6412 | rna-NM_001184170.1_CBS6412 | cds-NP_015398.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:664239-664724:- | gene-YPR073C_CBS6413 | rna-NM_001184170.1_CBS6413 | cds-NP_015398.1_CBS6413 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:691896-692381:- | gene-YPR073C_CENPK1137D | rna-NM_001184170.1_CENPK1137D | cds-NP_015398.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:990800-991285:- | gene-YPR073C_EthanolRed | rna-NM_001184170.1_EthanolRed | cds-NP_015398.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:669437-669922:- | gene-YPR073C_FaliES1 | rna-NM_001184170.1_FaliES1 | cds-NP_015398.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000443.1:2489-2974:- | gene-YPR073C_JAY291 | rna-NM_001184170.1_JAY291 | cds-NP_015398.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:682540-683025:- | gene-YPR073C_MUCL30387 | rna-NM_001184170.1_MUCL30387 | cds-NP_015398.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:681245-681730:- | gene-YPR073C_MUCL30388 | rna-NM_001184170.1_MUCL30388 | cds-NP_015398.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:660551-661036:- | gene-YPR073C_MUCL39482 | rna-NM_001184170.1_MUCL39482 | cds-NP_015398.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:723381-723866:- | gene-YPR073C_MUCL42920 | rna-NM_001184170.1_MUCL42920 | cds-NP_015398.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:691916-692401:- | gene-YPR073C_NCIM3186 | rna-NM_001184170.1_NCIM3186 | cds-NP_015398.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:668728-669213:- | gene-YPR073C_NCYC1407 | rna-NM_001184170.1_NCYC1407 | cds-NP_015398.1_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:675359-675844:- | gene-YPR073C_PE2H3 | rna-NM_001184170.1_PE2H3 | cds-NP_015398.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:675007-675492:- | gene-YPR073C_PE2H4 | rna-NM_001184170.1_PE2H4 | cds-NP_015398.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:691933-692418:- | gene-YPR073C_S288C | rna-NM_001184170.1_S288C | cds-NP_015398.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:8268-8753:+ | gene-YPR073C_SA1 | rna-NM_001184170.1_SA1 | cds-NP_015398.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:669212-669697:- | gene-YPR073C_ThermosaccDry | rna-NM_001184170.1_ThermosaccDry | cds-NP_015398.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:685366-685851:- | gene-YPR073C_VR1 | rna-NM_001184170.1_VR1 | cds-NP_015398.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:668440-668925:- | gene-YPR073C_ZTW1 | rna-NM_001184170.1_ZTW1 | cds-NP_015398.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:669175-669660:- | gene-YPR073C_Sparadoxus | rna-NM_001184170.1_Sparadoxus | cds-NP_015398.1_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |