LSR1 (YNCB0019C)

Gene profile

Gene name: LSR1
Reference locus (S288C): YNCB0019C
Gene biotype: snRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005296.1:664995-666169:- gene-YNCB0019C_AKU4011 rna-NR_132154.1_AKU4011 Unknown 99.7 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000066.1:35915-37089:- gene-YNCB0019C_BG1 rna-NR_132154.1_BG1 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005504.1:666149-667323:- gene-YNCB0019C_Bruggeman rna-NR_132154.1_Bruggeman Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005520.1:669354-670528:- gene-YNCB0019C_CAT1 rna-NR_132154.1_CAT1 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005360.1:656527-657701:- gene-YNCB0019C_CBS1585 rna-NR_132154.1_CBS1585 Unknown 99.7 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005344.1:662951-664125:- gene-YNCB0019C_CBS436 rna-NR_132154.1_CBS436 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005328.1:751507-752681:- gene-YNCB0019C_CBS6412 rna-NR_132154.1_CBS6412 Unknown 99.7 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005312.1:662568-663742:- gene-YNCB0019C_CBS6413 rna-NR_132154.1_CBS6413 Unknown 99.5 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001523.1:674467-675639:- gene-YNCB0019C_CENPK1137D rna-NR_132154.1_CENPK1137D Unknown 98.8 99.8 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005472.1:788236-789410:- gene-YNCB0019C_EthanolRed rna-NR_132154.1_EthanolRed Unknown 99.6 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005536.1:681343-682517:- gene-YNCB0019C_FaliES1 rna-NR_132154.1_FaliES1 Unknown 99.6 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000067.1:119835-121009:+ gene-YNCB0019C_JAY291 rna-NR_132154.1_JAY291 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005408.1:668166-669340:- gene-YNCB0019C_MUCL30387 rna-NR_132154.1_MUCL30387 Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005440.1:685243-686417:- gene-YNCB0019C_MUCL30388 rna-NR_132154.1_MUCL30388 Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005280.1:654879-656053:- gene-YNCB0019C_MUCL39482 rna-NR_132154.1_MUCL39482 Unknown 99.7 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005424.1:664721-665895:- gene-YNCB0019C_MUCL42920 rna-NR_132154.1_MUCL42920 Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011811.1:680485-681659:- gene-YNCB0019C_NCIM3186 rna-NR_132154.1_NCIM3186 Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005264.1:656741-657915:- gene-YNCB0019C_NCYC1407 rna-NR_132154.1_NCYC1407 Unknown 99.4 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994141.1:679856-681030:- gene-YNCB0019C_PE2H3 rna-NR_132154.1_PE2H3 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999873.1:677532-678706:- gene-YNCB0019C_PE2H4 rna-NR_132154.1_PE2H4 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001134.8:680688-681862:- gene-YNCB0019C_S288C rna-NR_132154.1_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000019.1:35813-36987:- gene-YNCB0019C_SA1 rna-NR_132154.1_SA1 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005488.1:680353-681527:- gene-YNCB0019C_ThermosaccDry rna-NR_132154.1_ThermosaccDry Unknown 99.6 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005456.1:660529-661703:- gene-YNCB0019C_VR1 rna-NR_132154.1_VR1 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000003.1:653217-654391:- gene-YNCB0019C_ZTW1 rna-NR_132154.1_ZTW1 Unknown 99.7 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047488.1:697205-698375:- gene-YNCB0019C_Sparadoxus rna-NR_132154.1_Sparadoxus Unknown 84.3 98.1 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files