Gene name: LSP1
Reference locus (S288C): YPL004C
Gene biotype: protein_coding
Description: Sphingolipid long chain base-responsive protein LSP1; Eisosome core component; eisosomes are large immobile patch structures at the cell cortex associated with endocytosis; phosphorylated on Thr233 upon Pkc1p hyperactivation in a Slt2p MAPK-dependent fashion; null mutants show activation of Pkc1p/Ypk1p stress resistance pathways; member of the BAR domain family
Top 10 interactors (score): PIL1 (0.995); NCE102 (0.99); MRP8 (0.97); PKH1 (0.963); EIS1 (0.957); SEG1 (0.934); PKH2 (0.927); SUR7 (0.92); ALD4 (0.906); PNC1 (0.904); GLK1 (0.903); TPS2 (0.901); TPS1 (0.899); TSL1 (0.879); SOL4 (0.872); GSY2 (0.864); GAD1 (0.864); PGM2 (0.862); YBR139W (0.857); RVS167 (0.839)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:522090-523115:- | gene-YPL004C_AKU4011 | rna-NM_001183818.1_AKU4011 | cds-NP_015321.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:374060-375085:+ | gene-YPL004C_BG1 | rna-NM_001183818.1_BG1 | cds-NP_015321.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:599031-600056:- | gene-YPL004C_Bruggeman | rna-NM_001183818.1_Bruggeman | cds-NP_015321.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:641777-642802:- | gene-YPL004C_CAT1 | rna-NM_001183818.1_CAT1 | cds-NP_015321.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:526267-527292:- | gene-YPL004C_CBS1585 | rna-NM_001183818.1_CBS1585 | cds-NP_015321.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:540333-541358:- | gene-YPL004C_CBS436 | rna-NM_001183818.1_CBS436 | cds-NP_015321.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:530016-531041:- | gene-YPL004C_CBS6412 | rna-NM_001183818.1_CBS6412 | cds-NP_015321.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:522727-523752:- | gene-YPL004C_CBS6413 | rna-NM_001183818.1_CBS6413 | cds-NP_015321.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:550633-551658:- | gene-YPL004C_CENPK1137D | rna-NM_001183818.1_CENPK1137D | cds-NP_015321.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:520514-521539:- | gene-YPL004C_EthanolRed | rna-NM_001183818.1_EthanolRed | cds-NP_015321.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:528344-529369:- | gene-YPL004C_FaliES1 | rna-NM_001183818.1_FaliES1 | cds-NP_015321.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000341.1:8644-9669:+ | gene-YPL004C_JAY291 | rna-NM_001183818.1_JAY291 | cds-NP_015321.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:539984-541009:- | gene-YPL004C_MUCL30387 | rna-NM_001183818.1_MUCL30387 | cds-NP_015321.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:539088-540113:- | gene-YPL004C_MUCL30388 | rna-NM_001183818.1_MUCL30388 | cds-NP_015321.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:519507-520532:- | gene-YPL004C_MUCL39482 | rna-NM_001183818.1_MUCL39482 | cds-NP_015321.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:578602-579627:- | gene-YPL004C_MUCL42920 | rna-NM_001183818.1_MUCL42920 | cds-NP_015321.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:550615-551640:- | gene-YPL004C_NCIM3186 | rna-NM_001183818.1_NCIM3186 | cds-NP_015321.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:526766-527791:- | gene-YPL004C_NCYC1407 | rna-NM_001183818.1_NCYC1407 | cds-NP_015321.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:533464-534489:- | gene-YPL004C_PE2H3 | rna-NM_001183818.1_PE2H3 | cds-NP_015321.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:533079-534104:- | gene-YPL004C_PE2H4 | rna-NM_001183818.1_PE2H4 | cds-NP_015321.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:550632-551657:- | gene-YPL004C_S288C | rna-NM_001183818.1_S288C | cds-NP_015321.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000076.1:47373-48398:- | gene-YPL004C_SA1 | rna-NM_001183818.1_SA1 | cds-NP_015321.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:528143-529168:- | gene-YPL004C_ThermosaccDry | rna-NM_001183818.1_ThermosaccDry | cds-NP_015321.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:543541-544566:- | gene-YPL004C_VR1 | rna-NM_001183818.1_VR1 | cds-NP_015321.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:527448-528473:- | gene-YPL004C_ZTW1 | rna-NM_001183818.1_ZTW1 | cds-NP_015321.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:527307-528347:- | gene-YPL004C_Sparadoxus | rna-NM_001183818.1_Sparadoxus | cds-NP_015321.1_Sparadoxus | 89.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |