Gene name: LSO2
Reference locus (S288C): YGR169C-A
Gene biotype: protein_coding
Description: Uncharacterized protein YGR169C-A; Protein with a potential role in response to iron deprivation; localizes to nucleus and cytoplasm, and nuclear localization is enhanced under iron-replete conditions; null mutant exhibits slow growth during iron deprivation; LSO2 has a paralog, LSO1, that arose from the whole genome duplication
Top 10 interactors (score): RPS5 (0.934); RPL10 (0.915); RPS15 (0.887); RPS1A (0.886); RPL25 (0.884); RPS13 (0.884); RPS20 (0.881); RPL5 (0.881); RPL29 (0.879); RPS12 (0.879); RPL32 (0.879); RPS31 (0.878); RPS2 (0.878); RPL28 (0.878); RPL30 (0.878); RPL38 (0.878); ASC1 (0.878); RPL39 (0.877); RPL2A (0.869); RPL2B (0.869)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:804144-804422:- | gene-YGR169C-A_AKU4011 | rna-NM_001184531.3_AKU4011 | cds-NP_878080.3_AKU4011 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:82266-82544:- | gene-YGR169C-A_BG1 | rna-NM_001184531.3_BG1 | cds-NP_878080.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:810075-810353:- | gene-YGR169C-A_Bruggeman | rna-NM_001184531.3_Bruggeman | cds-NP_878080.3_Bruggeman | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:805926-806204:- | gene-YGR169C-A_CAT1 | rna-NM_001184531.3_CAT1 | cds-NP_878080.3_CAT1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:804860-805138:- | gene-YGR169C-A_CBS1585 | rna-NM_001184531.3_CBS1585 | cds-NP_878080.3_CBS1585 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:808749-809027:- | gene-YGR169C-A_CBS436 | rna-NM_001184531.3_CBS436 | cds-NP_878080.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:796229-796507:- | gene-YGR169C-A_CBS6412 | rna-NM_001184531.3_CBS6412 | cds-NP_878080.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:801724-802002:- | gene-YGR169C-A_CBS6413 | rna-NM_001184531.3_CBS6413 | cds-NP_878080.3_CBS6413 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:836122-836400:- | gene-YGR169C-A_CENPK1137D | rna-NM_001184531.3_CENPK1137D | cds-NP_878080.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:790734-791012:- | gene-YGR169C-A_EthanolRed | rna-NM_001184531.3_EthanolRed | cds-NP_878080.3_EthanolRed | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:795125-795403:- | gene-YGR169C-A_FaliES1 | rna-NM_001184531.3_FaliES1 | cds-NP_878080.3_FaliES1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000112.1:37041-37319:- | gene-YGR169C-A_JAY291 | rna-NM_001184531.3_JAY291 | cds-NP_878080.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:807565-807843:- | gene-YGR169C-A_MUCL30387 | rna-NM_001184531.3_MUCL30387 | cds-NP_878080.3_MUCL30387 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:807264-807542:- | gene-YGR169C-A_MUCL30388 | rna-NM_001184531.3_MUCL30388 | cds-NP_878080.3_MUCL30388 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:800435-800713:- | gene-YGR169C-A_MUCL39482 | rna-NM_001184531.3_MUCL39482 | cds-NP_878080.3_MUCL39482 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:815387-815665:- | gene-YGR169C-A_MUCL42920 | rna-NM_001184531.3_MUCL42920 | cds-NP_878080.3_MUCL42920 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:836387-836665:- | gene-YGR169C-A_NCIM3186 | rna-NM_001184531.3_NCIM3186 | cds-NP_878080.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:795543-795821:- | gene-YGR169C-A_NCYC1407 | rna-NM_001184531.3_NCYC1407 | cds-NP_878080.3_NCYC1407 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:814735-815013:- | gene-YGR169C-A_PE2H3 | rna-NM_001184531.3_PE2H3 | cds-NP_878080.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:819845-820123:- | gene-YGR169C-A_PE2H4 | rna-NM_001184531.3_PE2H4 | cds-NP_878080.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:836387-836665:- | gene-YGR169C-A_S288C | rna-NM_001184531.3_S288C | cds-NP_878080.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000035.1:60044-60322:- | gene-YGR169C-A_SA1 | rna-NM_001184531.3_SA1 | cds-NP_878080.3_SA1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:815636-815914:- | gene-YGR169C-A_ThermosaccDry | rna-NM_001184531.3_ThermosaccDry | cds-NP_878080.3_ThermosaccDry | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:919885-920163:- | gene-YGR169C-A_VR1 | rna-NM_001184531.3_VR1 | cds-NP_878080.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:117080-117358:- | gene-YGR169C-A_ZTW1 | rna-NM_001184531.3_ZTW1 | cds-NP_878080.3_ZTW1 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:806553-806830:- | gene-YGR169C-A_Sparadoxus | rna-NM_001184531.3_Sparadoxus | cds-NP_878080.3_Sparadoxus | 93.9 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |