Gene name: LSO1
Reference locus (S288C): YJR005C-A
Gene biotype: protein_coding
Description: Uncharacterized protein YJR005C-A; Protein with a potential role in response to iron deprivation; transcription increases during iron deprivation and during treatment with 2-(6-benzyl-2-pyridyl)quinazoline (BPQ) and copper; regulated by Aft1p and, to a lesser extent, by Aft2p; originally identified as a syntenic homolog of an Ashbya gossypii gene; localizes to nucleus and cytoplasm, and nuclear localization is enhanced under iron-replete conditions
Top 10 interactors (score): YBR200W-A (0.896); YDR210W-B (0.896); SDD3 (0.749); HCR1 (0.715); BOL2 (0.7); MRPL28 (0.627); ATF1 (0.62); HNM1 (0.614); AFT1 (0.573); TMA46 (0.566); RPS5 (0.538); MAC1 (0.499); NOP13 (0.497); TIS11 (0.487); SPC97 (0.487); RPS1A (0.482); RPS1B (0.479); RPP0 (0.466); RPS15 (0.458); YAP5 (0.454)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:431646-431927:- | gene-YJR005C-A_AKU4011 | rna-NM_001184533.1_AKU4011 | cds-NP_878106.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:180800-181081:+ | gene-YJR005C-A_BG1 | rna-NM_001184533.1_BG1 | cds-NP_878106.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:445743-446024:- | gene-YJR005C-A_Bruggeman | rna-NM_001184533.1_Bruggeman | cds-NP_878106.1_Bruggeman | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:449684-449965:- | gene-YJR005C-A_CAT1 | rna-NM_001184533.1_CAT1 | cds-NP_878106.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:443231-443512:- | gene-YJR005C-A_CBS1585 | rna-NM_001184533.1_CBS1585 | cds-NP_878106.1_CBS1585 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:462210-462491:- | gene-YJR005C-A_CBS436 | rna-NM_001184533.1_CBS436 | cds-NP_878106.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:431460-431741:- | gene-YJR005C-A_CBS6412 | rna-NM_001184533.1_CBS6412 | cds-NP_878106.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:433687-433968:- | gene-YJR005C-A_CBS6413 | rna-NM_001184533.1_CBS6413 | cds-NP_878106.1_CBS6413 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:430902-431183:- | gene-YJR005C-A_CENPK1137D | rna-NM_001184533.1_CENPK1137D | cds-NP_878106.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:436618-436899:- | gene-YJR005C-A_EthanolRed | rna-NM_001184533.1_EthanolRed | cds-NP_878106.1_EthanolRed | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:447759-448040:- | gene-YJR005C-A_FaliES1 | rna-NM_001184533.1_FaliES1 | cds-NP_878106.1_FaliES1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000321.1:5202-5483:+ | gene-YJR005C-A_JAY291 | rna-NM_001184533.1_JAY291 | cds-NP_878106.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:446070-446351:- | gene-YJR005C-A_MUCL30387 | rna-NM_001184533.1_MUCL30387 | cds-NP_878106.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:442592-442873:- | gene-YJR005C-A_MUCL30388 | rna-NM_001184533.1_MUCL30388 | cds-NP_878106.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:436565-436846:- | gene-YJR005C-A_MUCL39482 | rna-NM_001184533.1_MUCL39482 | cds-NP_878106.1_MUCL39482 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:442005-442286:- | gene-YJR005C-A_MUCL42920 | rna-NM_001184533.1_MUCL42920 | cds-NP_878106.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:448456-448737:- | gene-YJR005C-A_NCIM3186 | rna-NM_001184533.1_NCIM3186 | cds-NP_878106.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:434459-434740:- | gene-YJR005C-A_NCYC1407 | rna-NM_001184533.1_NCYC1407 | cds-NP_878106.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:452868-453149:- | gene-YJR005C-A_PE2H3 | rna-NM_001184533.1_PE2H3 | cds-NP_878106.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:446562-446843:- | gene-YJR005C-A_PE2H4 | rna-NM_001184533.1_PE2H4 | cds-NP_878106.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:448477-448758:- | gene-YJR005C-A_S288C | rna-NM_001184533.1_S288C | cds-NP_878106.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:244486-244767:- | gene-YJR005C-A_SA1 | rna-NM_001184533.1_SA1 | cds-NP_878106.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:441418-441699:- | gene-YJR005C-A_ThermosaccDry | rna-NM_001184533.1_ThermosaccDry | cds-NP_878106.1_ThermosaccDry | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:443787-444068:- | gene-YJR005C-A_VR1 | rna-NM_001184533.1_VR1 | cds-NP_878106.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:421421-421702:- | gene-YJR005C-A_ZTW1 | rna-NM_001184533.1_ZTW1 | cds-NP_878106.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:446262-446543:- | gene-YJR005C-A_Sparadoxus | rna-NM_001184533.1_Sparadoxus | cds-NP_878106.1_Sparadoxus | 90.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |